Draft omics 02 #49
Workflow file for this run
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| # based on: https://github.com/quarto-dev/quarto-actions/blob/main/examples/quarto-book-gh-pages.yaml | |
| on: | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: main | |
| # to be able to trigger a manual build | |
| workflow_dispatch: | |
| name: Render and deploy Book | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install additional libraries on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev | |
| sudo apt-get install -y libharfbuzz-dev | |
| sudo apt-get install -y libfribidi-dev | |
| - uses: r-lib/actions/setup-renv@v2 | |
| - name: Install Quarto | |
| uses: quarto-dev/quarto-actions/install-quarto@v1 | |
| # Install any computing dependency you may need, usually either python and Jupyter or R | |
| # More specific examples will be shared on quarto-dev/quarto-actions project | |
| - name: Install R package | |
| run: | | |
| R -e "install.packages('xml2')" | |
| R -e "install.packages('downlit')" | |
| - name: Render book to all format | |
| # Add any command line argument needed | |
| run: | | |
| quarto render | |
| - name: Deploy 🚀 | |
| # only deploy when push to main | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| # The branch the action should deploy to. | |
| branch: gh-pages | |
| # The folder the action should deploy. Adapt if you changed in Quarto config | |
| folder: _site |