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3mmaRand committed Apr 4, 2024
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82 changes: 35 additions & 47 deletions core/week-2/workshop.html
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Expand Up @@ -487,11 +487,8 @@ <h1 class="title">Workshop</h1>
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<pre><code>data
images
overview.html
overview.qmd
study_after_workshop.html
study_after_workshop.qmd
study_before_workshop.html
study_before_workshop.ipynb
study_before_workshop.qmd
workshop.html
Expand All @@ -504,62 +501,53 @@ <h1 class="title">Workshop</h1>
<div class="cell">
<div class="sourceCode cell-code" id="cb9"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-l</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 268
drwxr-xr-x 2 runner docker 4096 Apr 4 13:44 data
drwxr-xr-x 2 runner docker 4096 Apr 4 13:44 images
-rw-r--r-- 1 runner docker 33459 Apr 4 13:48 overview.html
-rw-r--r-- 1 runner docker 1597 Apr 4 13:44 overview.qmd
-rw-r--r-- 1 runner docker 31535 Apr 4 13:49 study_after_workshop.html
-rw-r--r-- 1 runner docker 184 Apr 4 13:44 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 72163 Apr 4 13:49 study_before_workshop.html
-rw-r--r-- 1 runner docker 4807 Apr 4 13:44 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13029 Apr 4 13:44 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 58063 Apr 4 13:44 workshop.html
-rw-r--r-- 1 runner docker 8550 Apr 4 13:44 workshop.qmd
-rw-r--r-- 1 runner docker 8564 Apr 4 13:49 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4096 Apr 4 13:44 workshop_files</code></pre>
<pre><code>total 128
drwxr-xr-x 2 runner docker 4096 Apr 4 14:06 data
drwxr-xr-x 2 runner docker 4096 Apr 4 14:06 images
-rw-r--r-- 1 runner docker 1597 Apr 4 14:06 overview.qmd
-rw-r--r-- 1 runner docker 184 Apr 4 14:06 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 4807 Apr 4 14:06 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13029 Apr 4 14:06 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 58063 Apr 4 14:06 workshop.html
-rw-r--r-- 1 runner docker 8550 Apr 4 14:06 workshop.qmd
-rw-r--r-- 1 runner docker 8564 Apr 4 14:08 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4096 Apr 4 14:06 workshop_files</code></pre>
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</div>
<p>You can use more than one option at once. The <code>-h</code> option stands for “human readable” and makes the file sizes easier to understand for humans:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb11"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-hl</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 268K
drwxr-xr-x 2 runner docker 4.0K Apr 4 13:44 data
drwxr-xr-x 2 runner docker 4.0K Apr 4 13:44 images
-rw-r--r-- 1 runner docker 33K Apr 4 13:48 overview.html
-rw-r--r-- 1 runner docker 1.6K Apr 4 13:44 overview.qmd
-rw-r--r-- 1 runner docker 31K Apr 4 13:49 study_after_workshop.html
-rw-r--r-- 1 runner docker 184 Apr 4 13:44 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 71K Apr 4 13:49 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Apr 4 13:44 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Apr 4 13:44 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 57K Apr 4 13:44 workshop.html
-rw-r--r-- 1 runner docker 8.4K Apr 4 13:44 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Apr 4 13:49 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4.0K Apr 4 13:44 workshop_files</code></pre>
<pre><code>total 128K
drwxr-xr-x 2 runner docker 4.0K Apr 4 14:06 data
drwxr-xr-x 2 runner docker 4.0K Apr 4 14:06 images
-rw-r--r-- 1 runner docker 1.6K Apr 4 14:06 overview.qmd
-rw-r--r-- 1 runner docker 184 Apr 4 14:06 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 4.7K Apr 4 14:06 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Apr 4 14:06 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 57K Apr 4 14:06 workshop.html
-rw-r--r-- 1 runner docker 8.4K Apr 4 14:06 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Apr 4 14:08 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4.0K Apr 4 14:06 workshop_files</code></pre>
</div>
</div>
<p>The <code>-a</code> option stands for “all” and shows us all the files, including hidden files.</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb13"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-alh</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 276K
drwxr-xr-x 5 runner docker 4.0K Apr 4 13:49 .
drwxr-xr-x 6 runner docker 4.0K Apr 4 13:48 ..
drwxr-xr-x 2 runner docker 4.0K Apr 4 13:44 data
drwxr-xr-x 2 runner docker 4.0K Apr 4 13:44 images
-rw-r--r-- 1 runner docker 33K Apr 4 13:48 overview.html
-rw-r--r-- 1 runner docker 1.6K Apr 4 13:44 overview.qmd
-rw-r--r-- 1 runner docker 31K Apr 4 13:49 study_after_workshop.html
-rw-r--r-- 1 runner docker 184 Apr 4 13:44 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 71K Apr 4 13:49 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Apr 4 13:44 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Apr 4 13:44 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 57K Apr 4 13:44 workshop.html
-rw-r--r-- 1 runner docker 8.4K Apr 4 13:44 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Apr 4 13:49 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4.0K Apr 4 13:44 workshop_files</code></pre>
<pre><code>total 136K
drwxr-xr-x 5 runner docker 4.0K Apr 4 14:08 .
drwxr-xr-x 6 runner docker 4.0K Apr 4 14:06 ..
drwxr-xr-x 2 runner docker 4.0K Apr 4 14:06 data
drwxr-xr-x 2 runner docker 4.0K Apr 4 14:06 images
-rw-r--r-- 1 runner docker 1.6K Apr 4 14:06 overview.qmd
-rw-r--r-- 1 runner docker 184 Apr 4 14:06 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 4.7K Apr 4 14:06 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Apr 4 14:06 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 57K Apr 4 14:06 workshop.html
-rw-r--r-- 1 runner docker 8.4K Apr 4 14:06 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Apr 4 14:08 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4.0K Apr 4 14:06 workshop_files</code></pre>
</div>
</div>
<p>You can move about with the <code>cd</code> command, which stands for “change directory”. You can use it to move into a directory by specifying the path to the directory:</p>
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212 changes: 179 additions & 33 deletions omics/kelly/workshop.html

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130 changes: 54 additions & 76 deletions omics/week-5/workshop.html

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