From 28a09147a1293637cc75659be0815159f4897a08 Mon Sep 17 00:00:00 2001 From: Emma Rand Date: Sat, 7 Oct 2023 11:45:04 +0100 Subject: [PATCH] fix --- omics/week-3/study_before_workshop.qmd | 20 +++++++++++++------- 1 file changed, 13 insertions(+), 7 deletions(-) diff --git a/omics/week-3/study_before_workshop.qmd b/omics/week-3/study_before_workshop.qmd index 06389b8..89d226b 100644 --- a/omics/week-3/study_before_workshop.qmd +++ b/omics/week-3/study_before_workshop.qmd @@ -85,11 +85,11 @@ width="200"} ::: incremental - find genes important in frog development -- Important means genes that are differentially expressed between the - control and the FGF treated sibling +- Important means the genes that are differentially expressed between + the control-treated and the FGF-treated siblings -- Differentially expressed means the expression on one group is - significantly higher than the other +- Differentially expressed means the expression in one group is + significantly higher than in the other ::: ## 🐸 Guided analysis @@ -135,7 +135,7 @@ width="200"} - There are three cell types: LT-HSCs, HSPCs, Progs [These are the "treaments"]{style="color:#009900"} -- Many cells of each cell type were sequenced: [These are the +- Many cells of each type were sequenced: [These are the replicates]{style="color:#009900"} - [155 LT-HSCs, 701 HSPCs, 798 Progs]{style="color:#009900"} @@ -150,8 +150,8 @@ width="200"} - Important means genes that are differentially expressed between at least two cell types -- Differentially expressed means the expression on one group is - significantly higher than the other +- Differentially expressed means the expression in one group is + significantly higher than in the other ::: ## 🐭 Guided analysis @@ -182,7 +182,13 @@ width="200"} but are harder to align - Long-read technologies e.g. Nanopore have lower base accuracy but are easier to align +::: + +# The raw data +## Raw Sequence data + +::: incremental - Sequencing technology is constantly improving - Optional: You can read more about Sequencing technologies in