From 6209a870652462a47d9510c85f4fa6172cb8c392 Mon Sep 17 00:00:00 2001
From: Emma Rand <emma.rand@york.ac.uk>
Date: Thu, 5 Oct 2023 19:32:01 +0100
Subject: [PATCH] attempt to fix ijtiff issue

---
 .github/workflows/quarto-gh-pages-html.yaml |  2 +-
 core/week-2/workshop.qmd                    | 17 +++--------------
 2 files changed, 4 insertions(+), 15 deletions(-)

diff --git a/.github/workflows/quarto-gh-pages-html.yaml b/.github/workflows/quarto-gh-pages-html.yaml
index a944861..3b454b2 100644
--- a/.github/workflows/quarto-gh-pages-html.yaml
+++ b/.github/workflows/quarto-gh-pages-html.yaml
@@ -25,7 +25,7 @@ jobs:
           sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev
           sudo apt-get install -y libharfbuzz-dev 
           sudo apt-get install -y libfribidi-dev
-          sudo apt-get -y install libwebp-dev
+          
           
           
       - uses: r-lib/actions/setup-renv@v2
diff --git a/core/week-2/workshop.qmd b/core/week-2/workshop.qmd
index bdfbd55..588306f 100644
--- a/core/week-2/workshop.qmd
+++ b/core/week-2/workshop.qmd
@@ -35,11 +35,11 @@ In this workshop you will
 
 [control_merged.tif](data/control_merged.tif)
 
-```{r}
+```r
 library(ijtiff)
 img <- read_tif("data/control_merged.tif")
 ```
-```{r}
+```r
 img
 ```
 
@@ -54,7 +54,7 @@ img
 
 - we might normally call this a multi-dimensional array: x and y coordinates of the pixels are 2 dimensions, the channel is the third dimension and time is the forth dimension
 
-```{r}
+```r
 display(img)
 ```
 
@@ -302,18 +302,7 @@ You're finished!
 
 [Consolidate](study_after_workshop.qmd)
 
-# The Code file
 
-These contain all the code needed in the workshop even where it is not
-visible on the webpage.
-
-The [workshop.qmd](workshop.qmd) file is the file I use to compile the
-practical. Qmd stands for Quarto markdown. It allows code and ordinary
-text to be interleaved to produce well-formatted reports including
-webpages. Right-click on the link and choose Save-As to download. You
-will be able to open the Qmd file in RStudio. Alternatively, [View in
-Browser](https://github.com/3mmaRand/). Coding and thinking answers are
-marked with `#---CODING ANSWER---` and `#---THINKING ANSWER---`
 
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 `kableExtra` [@kableExtra]