From a97c6203d5dbbbce56e6dff5f414925435e3c363 Mon Sep 17 00:00:00 2001
From: Emma Rand <7593411+3mmaRand@users.noreply.github.com>
Date: Fri, 21 Jul 2023 15:13:37 +0100
Subject: [PATCH] Initial commit

---
 .github/.gitignore                          |  1 +
 .github/workflows/quarto-gh-pages-html.yaml | 49 +++++++++++++++++++++
 .gitignore                                  |  5 +++
 BIO00088H-data.Rproj                        | 13 ++++++
 _quarto.yml                                 | 19 ++++++++
 about.qmd                                   |  5 +++
 index.qmd                                   |  7 +++
 styles.css                                  |  1 +
 8 files changed, 100 insertions(+)
 create mode 100644 .github/.gitignore
 create mode 100644 .github/workflows/quarto-gh-pages-html.yaml
 create mode 100644 .gitignore
 create mode 100644 BIO00088H-data.Rproj
 create mode 100644 _quarto.yml
 create mode 100644 about.qmd
 create mode 100644 index.qmd
 create mode 100644 styles.css

diff --git a/.github/.gitignore b/.github/.gitignore
new file mode 100644
index 0000000..0b84df0
--- /dev/null
+++ b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
\ No newline at end of file
diff --git a/.github/workflows/quarto-gh-pages-html.yaml b/.github/workflows/quarto-gh-pages-html.yaml
new file mode 100644
index 0000000..92979eb
--- /dev/null
+++ b/.github/workflows/quarto-gh-pages-html.yaml
@@ -0,0 +1,49 @@
+# based on: https://github.com/quarto-dev/quarto-actions/blob/main/examples/quarto-book-gh-pages.yaml
+
+on:
+  push:
+    branches: main
+  pull_request:
+    branches: main
+  # to be able to trigger a manual build
+  workflow_dispatch:
+
+name: Render and deploy Book
+
+jobs:
+  build-deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+      - name: Install additional libraries on Linux
+        if: runner.os == 'Linux'
+        run: | 
+          sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev
+          sudo apt-get install -y libharfbuzz-dev 
+          sudo apt-get install -y libfribidi-dev
+          
+      - uses: r-lib/actions/setup-renv@v2
+
+      - name: Install Quarto
+        uses: quarto-dev/quarto-actions/install-quarto@v1
+ 
+      # Install any computing dependency you may need, usually either python and Jupyter or R
+      # More specific examples will be shared on quarto-dev/quarto-actions project
+
+      - name: Render book to all format
+        # Add any command line argument needed
+        run: |
+          quarto render
+      - name: Deploy 🚀
+        # only deploy when push to main
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4
+        with:
+          # The branch the action should deploy to.
+          branch: gh-pages
+          # The folder the action should deploy. Adapt if you changed in Quarto config
+          folder: _site
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..565f2b6
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,5 @@
+.Rproj.user
+.Rhistory
+.Rdata
+.httr-oauth
+.DS_Store
diff --git a/BIO00088H-data.Rproj b/BIO00088H-data.Rproj
new file mode 100644
index 0000000..8e3c2eb
--- /dev/null
+++ b/BIO00088H-data.Rproj
@@ -0,0 +1,13 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
diff --git a/_quarto.yml b/_quarto.yml
new file mode 100644
index 0000000..08015c7
--- /dev/null
+++ b/_quarto.yml
@@ -0,0 +1,19 @@
+project:
+  type: website
+
+website:
+  title: "BIO00088H-data"
+  navbar:
+    left:
+      - href: index.qmd
+        text: Home
+      - about.qmd
+
+format:
+  html:
+    theme: cosmo
+    css: styles.css
+    toc: true
+
+editor: visual
+
diff --git a/about.qmd b/about.qmd
new file mode 100644
index 0000000..07c5e7f
--- /dev/null
+++ b/about.qmd
@@ -0,0 +1,5 @@
+---
+title: "About"
+---
+
+About this site
diff --git a/index.qmd b/index.qmd
new file mode 100644
index 0000000..699dfee
--- /dev/null
+++ b/index.qmd
@@ -0,0 +1,7 @@
+---
+title: "BIO00088H-data"
+---
+
+This is a Quarto website.
+
+To learn more about Quarto websites visit <https://quarto.org/docs/websites>.
diff --git a/styles.css b/styles.css
new file mode 100644
index 0000000..2ddf50c
--- /dev/null
+++ b/styles.css
@@ -0,0 +1 @@
+/* css styles */