diff --git a/.github/workflows/quarto-gh-pages-html.yaml b/.github/workflows/quarto-gh-pages-html.yaml index 92979eb..534a27f 100644 --- a/.github/workflows/quarto-gh-pages-html.yaml +++ b/.github/workflows/quarto-gh-pages-html.yaml @@ -33,7 +33,12 @@ jobs: # Install any computing dependency you may need, usually either python and Jupyter or R # More specific examples will be shared on quarto-dev/quarto-actions project - + + - name: Install R package + run: | + R -e "install.packages('xml2')" + R -e "install.packages('downlit')" + - name: Render book to all format # Add any command line argument needed run: | diff --git a/_site/about.html b/_site/about.html index 0d9dfa9..5a73041 100644 --- a/_site/about.html +++ b/_site/about.html @@ -2,7 +2,7 @@ - + @@ -18,7 +18,7 @@ ul.task-list{list-style: none;} ul.task-list li input[type="checkbox"] { width: 0.8em; - margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */ + margin: 0 0.8em 0.2em -1.6em; vertical-align: middle; } @@ -56,12 +56,12 @@ "search-more-matches-text": "more matches in this document", "search-clear-button-title": "Clear", "search-detached-cancel-button-title": "Cancel", - "search-submit-button-title": "Submit", - "search-label": "Search" + "search-submit-button-title": "Submit" } } + @@ -75,29 +75,25 @@ Data Analysis for Group Project - @@ -159,23 +155,9 @@

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icon: icon }; anchorJS.add('.anchored'); - const isCodeAnnotation = (el) => { - for (const clz of el.classList) { - if (clz.startsWith('code-annotation-')) { - return true; - } - } - return false; - } const clipboard = new window.ClipboardJS('.code-copy-button', { - text: function(trigger) { - const codeEl = trigger.previousElementSibling.cloneNode(true); - for (const childEl of codeEl.children) { - if (isCodeAnnotation(childEl)) { - childEl.remove(); - } - } - return codeEl.innerText; + target: function(trigger) { + return trigger.previousElementSibling; } }); clipboard.on('success', function(e) { @@ -240,92 +222,6 @@

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return note.innerHTML; }); } - let selectedAnnoteEl; - const selectorForAnnotation = ( cell, annotation) => { - let cellAttr = 'data-code-cell="' + cell + '"'; - let lineAttr = 'data-code-annotation="' + annotation + '"'; - const selector = 'span[' + cellAttr + '][' + lineAttr + ']'; - return selector; - } - const selectCodeLines = (annoteEl) => { - const doc = window.document; - const targetCell = annoteEl.getAttribute("data-target-cell"); - const targetAnnotation = annoteEl.getAttribute("data-target-annotation"); - const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation)); - const lines = annoteSpan.getAttribute("data-code-lines").split(","); - const lineIds = lines.map((line) => { - return targetCell + "-" + line; - }) - let top = null; - let height = null; - let parent = null; - if (lineIds.length > 0) { - //compute the position of the single el (top and bottom and make a div) - const el = window.document.getElementById(lineIds[0]); - top = el.offsetTop; - height = el.offsetHeight; - parent = el.parentElement.parentElement; - if (lineIds.length > 1) { - const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]); - const bottom = lastEl.offsetTop + lastEl.offsetHeight; - height = bottom - top; - } - if (top !== null && height !== null && parent !== null) { - // cook up a div (if necessary) and position it - let div = window.document.getElementById("code-annotation-line-highlight"); - if (div === null) { - div = window.document.createElement("div"); - div.setAttribute("id", "code-annotation-line-highlight"); - div.style.position = 'absolute'; - parent.appendChild(div); - } - div.style.top = top - 2 + "px"; - div.style.height = height + 4 + "px"; - let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter"); - if (gutterDiv === null) { - gutterDiv = window.document.createElement("div"); - gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter"); - gutterDiv.style.position = 'absolute'; - const codeCell = window.document.getElementById(targetCell); - const gutter = codeCell.querySelector('.code-annotation-gutter'); - gutter.appendChild(gutterDiv); - } - gutterDiv.style.top = top - 2 + "px"; - gutterDiv.style.height = height + 4 + "px"; - } - selectedAnnoteEl = annoteEl; - } - }; - const unselectCodeLines = () => { - const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"]; - elementsIds.forEach((elId) => { - const div = window.document.getElementById(elId); - if (div) { - div.remove(); - } - }); - selectedAnnoteEl = undefined; - }; - // Attach click handler to the DT - const annoteDls = window.document.querySelectorAll('dt[data-target-cell]'); - for (const annoteDlNode of annoteDls) { - annoteDlNode.addEventListener('click', (event) => { - const clickedEl = event.target; - if (clickedEl !== selectedAnnoteEl) { - unselectCodeLines(); - const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active'); - if (activeEl) { - activeEl.classList.remove('code-annotation-active'); - } - selectCodeLines(clickedEl); - clickedEl.classList.add('code-annotation-active'); - } else { - // Unselect the line - unselectCodeLines(); - clickedEl.classList.remove('code-annotation-active'); - } - }); - } const findCites = (el) => { const parentEl = el.parentElement; if (parentEl) { @@ -364,12 +260,12 @@

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} } var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//); - var filterRegex = new RegExp("^(?:http:|https:)\/\/3mmarand\.github\.io\/BIO00088H-data"); + var filterRegex = new RegExp(/^(?:http:|https:)\/\/3mmarand\.github\.io\/BIO00088H-data/); var isInternal = (href) => { return filterRegex.test(href) || localhostRegex.test(href); } // Inspect non-navigation links and adorn them if external - var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item)'); + var links = window.document.querySelectorAll('a:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item)'); for (var i=0; iAbout