diff --git a/omics/week-5/Rplot001.jpg b/omics/week-5/Rplot001.jpg new file mode 100644 index 0000000..fd0b397 Binary files /dev/null and b/omics/week-5/Rplot001.jpg differ diff --git a/omics/week-5/figures/frog-s30-volcano.png b/omics/week-5/figures/frog-s30-volcano.png index 8c93ae9..007c8be 100644 Binary files a/omics/week-5/figures/frog-s30-volcano.png and b/omics/week-5/figures/frog-s30-volcano.png differ diff --git a/omics/week-5/workshop.qmd b/omics/week-5/workshop.qmd index d80343c..21bd7c3 100644 --- a/omics/week-5/workshop.qmd +++ b/omics/week-5/workshop.qmd @@ -521,23 +521,12 @@ Notice the dataframe returned only has 279 rows, not 280. Which one is missing? ```{r} #| error: true -prog_hspc_results |> (ensembl_gene_id) |> +prog_hspc_results |> select(ensembl_gene_id) |> filter(!ensembl_gene_id %in% gene_info$ensembl_gene_id) ``` -``` -Error: - ! [conflicted] select found in 2 packages. -Either pick the one you want with `::`: -• biomaRt::select -• dplyr::select -Or declare a preference with `conflicts_prefer()`: -• conflicts_prefer(biomaRt::select) -• conflicts_prefer(dplyr::select) -Run `rlang::last_trace()` to see where the error occurred. -``` ```{r} prog_hspc_results |> dplyr::select(ensembl_gene_id) |>