diff --git a/README.md b/README.md index 5187413..febb5db 100644 --- a/README.md +++ b/README.md @@ -13,11 +13,11 @@ Ready-to-run executables of mzRecal for Linux and Microsoft Windows can be downl ## Compiling -mzRecal is written in [Go](https://golang.org/). The software was tested with version 1.16 +mzRecal is written in [Go](https://golang.org/). The software was tested with Go version 1.16 ### Linux -On any recent Ubuntu/Debian, to install the prerequisites and download/build the executable (both for Linux and for Windows): +On any recent Ubuntu/Debian, to install the prerequisites and download/build the executable: * [install Go](https://golang.org/doc/install) using default install options @@ -27,11 +27,11 @@ git clone https://github.com/524D/mzrecal cd mzrecal; ./build.sh ``` -The executables are put in directory `~/tools`. +The executables (both for Linux and for Windows) are put in directory `~/tools`. ### Windows -On Windows, to install the prerequisites and download/build the executable (both for Linux and for Windows): +On Windows, to install the prerequisites and download/build the executable: * [install Go](https://golang.org/doc/install) using default install options * [Install git](https://git-scm.com/download/win/) using default install options @@ -39,7 +39,7 @@ On Windows, to install the prerequisites and download/build the executable (both * Open git bash (from the Windows start menu) * Get mzRecal. From git bash prompt: `git clone https://github.com/524D/mzrecal` * Build mzRecal. From git bash prompt: `cd mzrecal; ./build.sh`. -The executables are put in directory `tools` relative to the user's home directory. +The executables (both for Windows and for Linux) are put in directory `tools` relative to the user's home directory. ## Input and output @@ -83,6 +83,11 @@ USAGE: using peptide identifications in an accompanying mzID file. OPTIONS: + -acceptprofile + Accept non-peak picked (profile) input. + This is a kludge, and will be removed when mzRecal can perform peak-picking. + By setting "acceptprofile", the value of option "calmult" is automatically + set to 0 and the default of "minpeak" is set to 100000 -cal filename filename for output of computed calibration parameters -calmult int