-
-
\ No newline at end of file
diff --git a/docs/community_resources/training/ACCESS_training.md b/docs/drafts/training/ACCESS_training.md
similarity index 100%
rename from docs/community_resources/training/ACCESS_training.md
rename to docs/drafts/training/ACCESS_training.md
diff --git a/docs/community_resources/training/additional_training.md b/docs/drafts/training/additional_training.md
similarity index 100%
rename from docs/community_resources/training/additional_training.md
rename to docs/drafts/training/additional_training.md
diff --git a/docs/community_resources/training/git-version-control.md b/docs/drafts/training/git-version-control.md
similarity index 100%
rename from docs/community_resources/training/git-version-control.md
rename to docs/drafts/training/git-version-control.md
diff --git a/docs/community_resources/training/hpc.md b/docs/drafts/training/hpc.md
similarity index 100%
rename from docs/community_resources/training/hpc.md
rename to docs/drafts/training/hpc.md
diff --git a/docs/community_resources/training/index.md b/docs/drafts/training/index.md
similarity index 94%
rename from docs/community_resources/training/index.md
rename to docs/drafts/training/index.md
index 5a690e19f..2caee1ab4 100644
--- a/docs/community_resources/training/index.md
+++ b/docs/drafts/training/index.md
@@ -1,7 +1,5 @@
# Training and Policies
-
-
This space is intended to promote training material relevant to ACCESS and its community. The training material can be directly relevant to ACCESS and its model components, such as:
- using coupled models and model components
diff --git a/docs/community_resources/training/nci-training.md b/docs/drafts/training/nci-training.md
similarity index 100%
rename from docs/community_resources/training/nci-training.md
rename to docs/drafts/training/nci-training.md
diff --git a/docs/js/miscellaneous.js b/docs/js/miscellaneous.js
index 7689a8534..46245f300 100644
--- a/docs/js/miscellaneous.js
+++ b/docs/js/miscellaneous.js
@@ -6,16 +6,6 @@ function sortTables() {
tables.forEach(table => new Tablesort(table));
}
-/*
- Remove 'edit' and 'view' icons from homepage
-*/
-function removeIconsFromHomepage() {
- if (location.pathname.match('^(/|/development_site/|/pr-preview/pr-[0-9]*/)$')) {
- let icons=document.querySelectorAll(".md-content__button.md-icon");
- icons.forEach(icon=>icon.style.display="none");
- }
-}
-
/*
Adjust the scrolling so that the paragraph's titles is not
partially covered by the sticky banner when clicking on a toc link
@@ -226,7 +216,6 @@ function main() {
adjustScrollingToId();
tabFunctionality();
sortTables();
- removeIconsFromHomepage();
addExternalLinkIcon();
fitText();
toggleTerminalAnimations();
diff --git a/docs/model_evaluation/index.md b/docs/model_evaluation/index.md
index 50a70228a..59863d245 100644
--- a/docs/model_evaluation/index.md
+++ b/docs/model_evaluation/index.md
@@ -94,9 +94,7 @@ For the evaluation and diagnosis of ACCESS climate models, the following tools a
* Data format processing tools like APP4
* An Evaluation Recipe Gallery with searching functionality
-While this work is in progress, you can refer to a collection of links to existing tools (not curated by ACCESS-NRI) in the [community tab](../community_resources/index.md).
-
-
+While this work is in progress, you can refer to a collection of links to existing tools (not curated by ACCESS-NRI) in the [community tab](../community_resources/index.md).
-
On this page, we will provide you a list of currated data processing tools.
While we are still ramping up this service, please take a look at the gallery of community tools on [Community Resources -> Community Data Processing Tools](../community_resources/community_med/community_data_processing.md) .
\ No newline at end of file
diff --git a/docs/model_evaluation/model_evaluation_live_diagnostics.md b/docs/model_evaluation/model_evaluation_live_diagnostics.md
index 2a396c3e0..68f7d3016 100644
--- a/docs/model_evaluation/model_evaluation_live_diagnostics.md
+++ b/docs/model_evaluation/model_evaluation_live_diagnostics.md
@@ -1,6 +1,4 @@
# Live Diagnostics on Gadi
-
-
Here, we will describe the tools we provide for "live-diagnostics" of the ACCESS configurations.
These tools allow you to check model output/progress/failures at specified time steps while your model is running.
diff --git a/docs/model_evaluation/model_evaluation_on_gadi/model_evaluation_on_gadi_esmvaltool.md b/docs/model_evaluation/model_evaluation_on_gadi/model_evaluation_on_gadi_esmvaltool.md
index 76e15a240..5aa1d92ec 100644
--- a/docs/model_evaluation/model_evaluation_on_gadi/model_evaluation_on_gadi_esmvaltool.md
+++ b/docs/model_evaluation/model_evaluation_on_gadi/model_evaluation_on_gadi_esmvaltool.md
@@ -1,15 +1,9 @@
-# Tutorial for using ESMValTool on Gadi
+# ACCESS-NRI ESMValTool-workflow at NCI
## What is ESMValTool?
-The Earth System Model Evaluation Tool (ESMValTool) is a climate model diagnostics and evaluation software package to better understand the causes and effects of model biases and inter-model spread.
-???+ warning "Support Level: Supported on Gadi, but not owned by ACCESS-NRI"
-
- ESMValTool is a community-developed climate model diagnostics and evaluation software package. While ACCESS-NRI does not own the code, it actively supports the use of ESMValTool software on Gadi. ACCESS-NRI provides access to the latest version of ESMValTool via the `xp65` `access-med` conda environment for Model Evaluation on Gadi.
+The Earth System Model Evaluation Tool (ESMValTool) is a tool developed for evaluation of Earth System Models in CMIP (Climate Model Intercomparison Projects). It allows for routine comparison of single or multiple models, either against predecessor versions or against observations. ESMValTool is a community-developed climate model diagnostics and evaluation software package, driven both by computational performance and scientific accuracy and reproducibility. It is open to both users and developers, encouraging open exchange of diagnostic source code and evaluation results from the Coupled Model Intercomparison Project CMIP ensemble.
-
-The ESMValTool mainly focuses on evaluating results from the Coupled Model Intercomparison Project (CMIP) ensemble.
-
For more information, refer to the official ESMValTool documentation.
- 
-
-
- Click here to see upcoming events
-
-
-
- 
-
-
- Want to advertise an event? Get in touch here
-
-
@@ -21,29 +15,45 @@ For more information, refer to the official conda environment for Model Evaluation on Gadi.
-
-ACCESS-NRI plans to routinely run benchmarks and comparisons of CMIP submissions for ACCESS models, as well as providing support to run ESMValTool recipes on Gadi. +ESMValTool is provided through the `xp65` project on Gadi. ### Pre-requisites -To run ESMValTool recipes, you need to be a member of the following NCI projects: +To enable the ESMValTool-workflow, you need to be a member of the `xp65` NCI projects: -- `xp65`, `ct11`, `fs38`, `oi10`, `rr3`, `al33`, `rt52`, `zz93` and `qv56`. +Depending on your needs, you may want to also joined the following supported data collections: -### Running ESMValTool recipes +- CMIP6: `fs38`, `oi10` +- CMIP5: `rr3`, `al33` +- ERA5 and ERA5-Land: `rt52`, `zz93` +- obs4MIPs: `qv56` + +### Loading the ESMValTool-workflow modules -To load the the `access-med` conda environment, execute the following commands: + +To load the the `esmvaltool` module, execute the following commands: ``` module use /g/data/xp65/public/modules - module load conda/access-med + module load esmvaltool +``` + +ESMValTool is pre-configured to access CMIP and observation datasets available on Gadi. +By default, ESMValTool looks for the `config_user.yml` file in the home directory, inside the `.esmvaltool` folder. +You can get a copy by running: + +``` +esmvaltool config get_config_user --path=dest ``` To list which ESMValTool recipes are available on Gadi, run: ``` - esmvaltool recipes list +esmvaltool recipes list ``` To find out details of a specific `recipe_name.yml`, execute: @@ -51,6 +61,11 @@ To find out details of a specific `recipe_name.yml`, execute: esmvaltool recipes show recipe_name.yml ``` +To retrieve a recipe (and modify it), execute: +``` +esmvaltool recipes get recipe_name.yml +``` + To execute `recipe_name.yml` and automatically download the required climate data to the default directory, run: ``` diff --git a/docs/model_evaluation/model_evaluation_recipe_gallery.md b/docs/model_evaluation/model_evaluation_recipe_gallery.md index 9ad2f2cf9..88ea48442 100644 --- a/docs/model_evaluation/model_evaluation_recipe_gallery.md +++ b/docs/model_evaluation/model_evaluation_recipe_gallery.md @@ -1,13 +1,11 @@ # Model Evaluation and Diagnostics (MED) Recipe Gallery - - While we are still building this gallery, please have a look at the Community MED Recipes listed at Community Resources -> Community Model Evaluation Recipes {{ community}} -Here, we plan to provide you with an embedded link to our actively maintained Model Evaluation and Dianostics (MED) Recipe Gallery, hosted at [medportal.herokuapp.com](https://medportal.herokuapp.com/models/published). For now, we provide a placeholder image with link and pointers to useful Model Evaluation and Dianostics (MED) resources. +Here, we plan to provide you with an embedded link to our actively maintained Model Evaluation and Dianostics (MED) Recipe Gallery, hosted at [medportal.herokuapp.com](https://medportal-dev-6a745f452687.herokuapp.com/papers/published). For now, we provide a placeholder image with link and pointers to useful Model Evaluation and Dianostics (MED) resources. -## Link to our MED Recipe Gallery +## Link to our MED Recipe Gallery - +
\ No newline at end of file
diff --git a/mkdocs.yml b/mkdocs.yml
index c3d8fa880..5ff66aae6 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -40,8 +40,6 @@ theme:
- navigation.indexes
- navigation.footer
- navigation.tracking # The URL in the address bar is automatically updated with active anchor
- - content.action.edit
- - content.action.view
- content.code.copy # for displaying copy icon at top right in code snippets
- content.code.annotate
- content.tabs.link
-ACCESS-NRI plans to routinely run benchmarks and comparisons of CMIP submissions for ACCESS models, as well as providing support to run ESMValTool recipes on Gadi. +ESMValTool is provided through the `xp65` project on Gadi. ### Pre-requisites -To run ESMValTool recipes, you need to be a member of the following NCI projects: +To enable the ESMValTool-workflow, you need to be a member of the `xp65` NCI projects: -- `xp65`, `ct11`, `fs38`, `oi10`, `rr3`, `al33`, `rt52`, `zz93` and `qv56`. +Depending on your needs, you may want to also joined the following supported data collections: -### Running ESMValTool recipes +- CMIP6: `fs38`, `oi10` +- CMIP5: `rr3`, `al33` +- ERA5 and ERA5-Land: `rt52`, `zz93` +- obs4MIPs: `qv56` + +### Loading the ESMValTool-workflow modules -To load the the `access-med` conda environment, execute the following commands: + +To load the the `esmvaltool` module, execute the following commands: ``` module use /g/data/xp65/public/modules - module load conda/access-med + module load esmvaltool +``` + +ESMValTool is pre-configured to access CMIP and observation datasets available on Gadi. +By default, ESMValTool looks for the `config_user.yml` file in the home directory, inside the `.esmvaltool` folder. +You can get a copy by running: + +``` +esmvaltool config get_config_user --path=dest ``` To list which ESMValTool recipes are available on Gadi, run: ``` - esmvaltool recipes list +esmvaltool recipes list ``` To find out details of a specific `recipe_name.yml`, execute: @@ -51,6 +61,11 @@ To find out details of a specific `recipe_name.yml`, execute: esmvaltool recipes show recipe_name.yml ``` +To retrieve a recipe (and modify it), execute: +``` +esmvaltool recipes get recipe_name.yml +``` + To execute `recipe_name.yml` and automatically download the required climate data to the default directory, run: ``` diff --git a/docs/model_evaluation/model_evaluation_recipe_gallery.md b/docs/model_evaluation/model_evaluation_recipe_gallery.md index 9ad2f2cf9..88ea48442 100644 --- a/docs/model_evaluation/model_evaluation_recipe_gallery.md +++ b/docs/model_evaluation/model_evaluation_recipe_gallery.md @@ -1,13 +1,11 @@ # Model Evaluation and Diagnostics (MED) Recipe Gallery - - While we are still building this gallery, please have a look at the Community MED Recipes listed at Community Resources -> Community Model Evaluation Recipes {{ community}} -Here, we plan to provide you with an embedded link to our actively maintained Model Evaluation and Dianostics (MED) Recipe Gallery, hosted at [medportal.herokuapp.com](https://medportal.herokuapp.com/models/published). For now, we provide a placeholder image with link and pointers to useful Model Evaluation and Dianostics (MED) resources. +Here, we plan to provide you with an embedded link to our actively maintained Model Evaluation and Dianostics (MED) Recipe Gallery, hosted at [medportal.herokuapp.com](https://medportal-dev-6a745f452687.herokuapp.com/papers/published). For now, we provide a placeholder image with link and pointers to useful Model Evaluation and Dianostics (MED) resources. -## Link to our MED Recipe Gallery +## Link to our MED Recipe Gallery - +
\ No newline at end of file
diff --git a/mkdocs.yml b/mkdocs.yml
index c3d8fa880..5ff66aae6 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -40,8 +40,6 @@ theme:
- navigation.indexes
- navigation.footer
- navigation.tracking # The URL in the address bar is automatically updated with active anchor
- - content.action.edit
- - content.action.view
- content.code.copy # for displaying copy icon at top right in code snippets
- content.code.annotate
- content.tabs.link