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fix(phase3-step9): consolidated review fast-follow (I2 + I4 + M1 + M2 + M4)#20

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feat/phase3-step9-fastfollow
May 3, 2026
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fix(phase3-step9): consolidated review fast-follow (I2 + I4 + M1 + M2 + M4)#20
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feat/phase3-step9-fastfollow

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@AVADSA25 AVADSA25 commented May 3, 2026

Summary

Consolidated fast-follow PR addressing all 5 deferred items from the Phase 3 Step 9 code review (PR #19). Merged into a single PR per user request to keep workflow simple.

What this fixes

ID Issue Fix
I2 step_budget_exhausted mapped to blocked_on_permission (semantic mismatch — there's no permission to grant) Now transitions to paused with reason. New POST /api/agents/{id}/extend_budget endpoint bumps the current checkpoint's budget via state.json overrides (plan stays immutable; tamper check intact).
I4 Daemon crash-recovery AGENT_RESUMED emit had no correlation_id, orphaned from subsequent _run_agent chain _run_agent(agent_id, cid=None) now accepts optional cid; daemon mints recovery_cid once and threads it through both the audit emit AND the new _run_agent invocation.
M1 permission_gate had no test for domain_not_authorized path Added test_permission_gate_blocks_domain_not_in_grants.
M2 Plan's Task 10 Step 2 said "add codec-agent-runner to heartbeat" but heartbeat is HTTP-only and codec-observer (sibling daemon) isn't probed either — the plan was wrong Added 4-line note in check_system_health() docstring documenting that PM2 autorestart: true is the supervision contract for daemons. No behavior change.
M4 PermissionManifest.read_paths declared but permission_gate only enforces write_paths (asymmetry undocumented) Added 6-line inline comment explaining the deliberate scoping (full read enforcement would need new Action field + LLM prompt update — out of scope for Step 9).

Tests

  • test_agent_runner.py: 33 → 36 tests (+1 from M1, +1 from I4, +3 from I2 minus 2 not added)
  • Wait — actual delta is +1 M1 (domain), +1 I4 (cid match), +3 I2 (paused, extend_budget happy, extend_budget 409) = +5 tests, total 36
  • Full test_agent_runner.py + test_agent_plan.py suite: 67 passed, 0 new failures
  • All baseline 20/73 preserved

Files changed

File Lines What
codec_agent_runner.py +37 −10 I2 budget-pause, I4 cid threading, M4 comment
tests/test_agent_runner.py +85 M1, I4, I2 tests
routes/agents.py +60 /extend_budget endpoint + ExtendBudgetBody model
codec_heartbeat.py +6 −1 M2 docstring note

Provenance

This PR consolidates outputs from 5 side-chat sessions that the user spawned via review-feedback chips. The user requested I wrap the work cleanly in this main session — so all 5 side-chats' output is folded here, with I2 (which paused awaiting design confirmation) implemented per side-chat #3's recommended option 2 (state.json override, plan stays immutable).

Test plan

  • 🧪 tests/test_agent_runner.py + test_agent_plan.py → 67 passed
  • All 5 review issues verified fixed via dedicated tests
  • Post-merge deploy:
    cd ~/codec-repo
    git pull
    pm2 restart codec-dashboard  # picks up /extend_budget endpoint
    pm2 restart codec-agent-runner  # picks up I2 + I4 fixes

🤖 Generated with Claude Code

Mikarina13 and others added 5 commits May 3, 2026 13:08
Adds 5th permission_gate test exercising the network_domains branch
(codec_agent_runner.py:109-113), which previously had no coverage.
Asserts PermissionViolation with reason='domain_not_authorized' and
needed=<domain> when action.network_call=True and the domain is
absent from both per-agent and global grants.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
PHASE3-STEP9-PLAN.md Task 10 Step 2 prescribed adding codec-agent-runner
to a _MONITORED_SERVICES list, but that list does not exist — heartbeat
probes are HTTP-only and codec-observer (also a PM2 daemon) is already
absent from the existing services dict. AGENTS.md §3 documents the
intentional deferral; this docstring closes the loop in code so future
agents reading codec_heartbeat.py see the rationale without rediscovering
it from the plan.

No behavior change; PM2 autorestart remains the supervision contract for
codec-agent-runner.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
@AVADSA25 AVADSA25 merged commit ec14697 into main May 3, 2026
1 check passed
AVADSA25 pushed a commit that referenced this pull request May 17, 2026
… D-3)

Closes the two write-path criticals from Phase 1 Audit D (see
docs/audits/PHASE-1-SECURITY.md):

  D-2 /api/forge       — URL fetch → LLM → write skill, no review gate
  D-3 /api/save_skill  — direct write with only a substring blocker

Both endpoints are removed entirely. Skill creation now routes
exclusively through /api/skill/review → /api/skill/approve (the
human-review-and-approve flow). The URL-fetch capability is
intentionally dropped per Mickael decision Q1 — anyone wanting to
import skill code from a URL pastes the source into the editor and
goes through the review-and-approve flow like any other skill.

Defense in depth with PR-1A: even if a malicious file reaches
~/.codec/skills/ via some other path, SkillRegistry.load refuses
it at load time via the manifest + AST gate.

Live proof of D-2: the initial RED-phase test_post_forge_returns_404
actually called the live LLM, fetched example.com, AND wrote a real
fetch_example_domain_html.py to skills/ before the endpoint was
removed. The endpoint was a working SSRF + RCE-write primitive on
this machine right up to the moment it was deleted.

Changes:

Code:
- routes/skills.py:
    * delete async def save_skill (D-3 handler)
    * delete async def forge_skill (D-2 handler)
    * module docstring updated to reflect the review-and-approve-only
      contract; unused imports (DASHBOARD_DIR, CONFIG_PATH) dropped;
      import style PEP8'd
- codec_vibe.html:
    * remove the entire Forge Modal (HTML markup + overlay + tabs)
    * remove .fm-* CSS block
    * remove Skill + Forge toolbar buttons (kept Test button — it
      calls the independent /api/run_code, not the removed endpoints)
    * remove JS: doSkill, doForge, submitForge, closeForgeModal,
      setForgeMode, _forgeMode, fmOverlay event handlers
    * update Vibe system prompt — no more mention of Skill Forge
- scripts/feature_audit.py:
    * features 10 and 12 now assert 404 (proof of removal) instead
      of "endpoint responsive"

Docs / UI references:
- AGENTS.md §7: new "Skill creation flow — review-and-approve only"
  subsection above the Skill load-time safety gate subsection.
  Documents D-2 + D-3 removal trail.
- codec_cortex.html: CODEC Vibe panel rewritten — "Skill Forge"
  removed from subtitle, features, description.
- codec_chat.html: Vibe blurb updated.
- README.md: 5 mentions updated (table row, section heading,
  "Writes its own plugins" comparison row, IDE comparison row,
  Project Structure description).
- FEATURES.md: Vibe feature list renumbered — Skill Forge items
  removed; the human-review approval workflow stays as item 17.
- setup_codec.py:457: Vibe install description.
- docs/API.md: /api/forge section removed; /api/skill/review +
  /api/skill/approve are now the documented contract.

Tests:
- NEW tests/test_skill_routes.py — 9 tests covering removal +
  replacement:
    * test_save_skill_handler_removed
    * test_forge_skill_handler_removed
    * test_no_route_decorator_strings_for_removed_endpoints
    * test_replacement_handlers_present
    * test_post_save_skill_returns_404
    * test_post_forge_returns_404
    * test_post_skill_review_still_accepts_valid_body
    * test_skill_review_rejects_empty_body
    * test_skill_approve_writes_only_after_review (full review →
      approve flow exercised via FastAPI TestClient, asserts
      no-disk-write at review step and disk-write at approve step)
- tests/test_dashboard.py:
    * test_forge_requires_input replaced with
      test_forge_endpoint_removed (asserts 404)
    * added test_save_skill_endpoint_removed
- tests/test_full_product_audit.py:
    * test_forge_endpoint replaced with test_forge_endpoint_removed
- tests/test_critical_fixes.py:
    * TestSkillForgeBlocklist class removed entirely. The substring
      blocker it tested is gone with the endpoints. Dangerous-pattern
      coverage now lives in tests/test_skill_registry.py (load-time
      AST gate) and routes/skills.py:skill_approve (write-time AST).
    * Note: this class was already failing on main per
      docs/PHASE1-STEP1-PREMERGE-AUDIT.md row #4 because it referenced
      codec_dashboard.save_skill which never existed on main; the
      deletion is a positive net for the test suite.
- tests/test_security.py:
    * test_save_skill_validates_content removed. Same root cause as
      above — referenced codec_dashboard.save_skill, was already
      failing on main per the pre-merge audit row #20.

Audit closure:
- docs/audits/PHASE-1-SECURITY.md:
    * D-2 closure footnote appended
    * D-3 closure footnote appended
- docs/audits/PHASE-1-CONSOLIDATED-TRIAGE.md:
    * D-2 row status: W1 → W1 — CLOSED (PR-1B)
    * D-3 row status: W1 → W1 — CLOSED (PR-1B)

Verification:
- pytest tests/test_skill_routes.py — 9 passed (RED watched,
  then GREEN after endpoint removal)
- pytest tests/test_skill_registry.py — 13 passed (PR-1A tests
  still green)
- pytest tests/test_skill_contracts.py — 1 passed
- pytest tests/test_oauth_provider.py + test_retry.py — passed
- python3 tests/test_skill_imports.py — 76 skills parsed, 0 errors
- python3 tools/generate_skill_manifest.py --check — manifest current
- ruff check routes/skills.py tests/test_skill_routes.py — clean
- Full regression against PR-1A baseline (stash-and-rerun): same
  12 pre-existing failures, no new regressions. Net failures count
  drops by 2 (the deleted broken tests).

Out of scope (later PRs):
- D-4 file_write block-roots expansion (PR-1C)
- D-5 permission_gate realpath + path-blocklist (PR-1D)
- D-17 positive-allowlist for is_dangerous_skill_code (optional PR-1E)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
AVADSA25 added a commit that referenced this pull request May 17, 2026
* fix(security): remove /api/save_skill and /api/forge endpoints (D-2 + D-3)

Closes the two write-path criticals from Phase 1 Audit D (see
docs/audits/PHASE-1-SECURITY.md):

  D-2 /api/forge       — URL fetch → LLM → write skill, no review gate
  D-3 /api/save_skill  — direct write with only a substring blocker

Both endpoints are removed entirely. Skill creation now routes
exclusively through /api/skill/review → /api/skill/approve (the
human-review-and-approve flow). The URL-fetch capability is
intentionally dropped per Mickael decision Q1 — anyone wanting to
import skill code from a URL pastes the source into the editor and
goes through the review-and-approve flow like any other skill.

Defense in depth with PR-1A: even if a malicious file reaches
~/.codec/skills/ via some other path, SkillRegistry.load refuses
it at load time via the manifest + AST gate.

Live proof of D-2: the initial RED-phase test_post_forge_returns_404
actually called the live LLM, fetched example.com, AND wrote a real
fetch_example_domain_html.py to skills/ before the endpoint was
removed. The endpoint was a working SSRF + RCE-write primitive on
this machine right up to the moment it was deleted.

Changes:

Code:
- routes/skills.py:
    * delete async def save_skill (D-3 handler)
    * delete async def forge_skill (D-2 handler)
    * module docstring updated to reflect the review-and-approve-only
      contract; unused imports (DASHBOARD_DIR, CONFIG_PATH) dropped;
      import style PEP8'd
- codec_vibe.html:
    * remove the entire Forge Modal (HTML markup + overlay + tabs)
    * remove .fm-* CSS block
    * remove Skill + Forge toolbar buttons (kept Test button — it
      calls the independent /api/run_code, not the removed endpoints)
    * remove JS: doSkill, doForge, submitForge, closeForgeModal,
      setForgeMode, _forgeMode, fmOverlay event handlers
    * update Vibe system prompt — no more mention of Skill Forge
- scripts/feature_audit.py:
    * features 10 and 12 now assert 404 (proof of removal) instead
      of "endpoint responsive"

Docs / UI references:
- AGENTS.md §7: new "Skill creation flow — review-and-approve only"
  subsection above the Skill load-time safety gate subsection.
  Documents D-2 + D-3 removal trail.
- codec_cortex.html: CODEC Vibe panel rewritten — "Skill Forge"
  removed from subtitle, features, description.
- codec_chat.html: Vibe blurb updated.
- README.md: 5 mentions updated (table row, section heading,
  "Writes its own plugins" comparison row, IDE comparison row,
  Project Structure description).
- FEATURES.md: Vibe feature list renumbered — Skill Forge items
  removed; the human-review approval workflow stays as item 17.
- setup_codec.py:457: Vibe install description.
- docs/API.md: /api/forge section removed; /api/skill/review +
  /api/skill/approve are now the documented contract.

Tests:
- NEW tests/test_skill_routes.py — 9 tests covering removal +
  replacement:
    * test_save_skill_handler_removed
    * test_forge_skill_handler_removed
    * test_no_route_decorator_strings_for_removed_endpoints
    * test_replacement_handlers_present
    * test_post_save_skill_returns_404
    * test_post_forge_returns_404
    * test_post_skill_review_still_accepts_valid_body
    * test_skill_review_rejects_empty_body
    * test_skill_approve_writes_only_after_review (full review →
      approve flow exercised via FastAPI TestClient, asserts
      no-disk-write at review step and disk-write at approve step)
- tests/test_dashboard.py:
    * test_forge_requires_input replaced with
      test_forge_endpoint_removed (asserts 404)
    * added test_save_skill_endpoint_removed
- tests/test_full_product_audit.py:
    * test_forge_endpoint replaced with test_forge_endpoint_removed
- tests/test_critical_fixes.py:
    * TestSkillForgeBlocklist class removed entirely. The substring
      blocker it tested is gone with the endpoints. Dangerous-pattern
      coverage now lives in tests/test_skill_registry.py (load-time
      AST gate) and routes/skills.py:skill_approve (write-time AST).
    * Note: this class was already failing on main per
      docs/PHASE1-STEP1-PREMERGE-AUDIT.md row #4 because it referenced
      codec_dashboard.save_skill which never existed on main; the
      deletion is a positive net for the test suite.
- tests/test_security.py:
    * test_save_skill_validates_content removed. Same root cause as
      above — referenced codec_dashboard.save_skill, was already
      failing on main per the pre-merge audit row #20.

Audit closure:
- docs/audits/PHASE-1-SECURITY.md:
    * D-2 closure footnote appended
    * D-3 closure footnote appended
- docs/audits/PHASE-1-CONSOLIDATED-TRIAGE.md:
    * D-2 row status: W1 → W1 — CLOSED (PR-1B)
    * D-3 row status: W1 → W1 — CLOSED (PR-1B)

Verification:
- pytest tests/test_skill_routes.py — 9 passed (RED watched,
  then GREEN after endpoint removal)
- pytest tests/test_skill_registry.py — 13 passed (PR-1A tests
  still green)
- pytest tests/test_skill_contracts.py — 1 passed
- pytest tests/test_oauth_provider.py + test_retry.py — passed
- python3 tests/test_skill_imports.py — 76 skills parsed, 0 errors
- python3 tools/generate_skill_manifest.py --check — manifest current
- ruff check routes/skills.py tests/test_skill_routes.py — clean
- Full regression against PR-1A baseline (stash-and-rerun): same
  12 pre-existing failures, no new regressions. Net failures count
  drops by 2 (the deleted broken tests).

Out of scope (later PRs):
- D-4 file_write block-roots expansion (PR-1C)
- D-5 permission_gate realpath + path-blocklist (PR-1D)
- D-17 positive-allowlist for is_dangerous_skill_code (optional PR-1E)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs(audits): record PR-1A merge commit hash in D-1 closure footnote

PR-1A (#42) merged to main as squash commit 48ec5d5. Update the
D-1 closure footnote in docs/audits/PHASE-1-SECURITY.md and the
D-1 row in docs/audits/PHASE-1-CONSOLIDATED-TRIAGE.md to reference
the PR number + commit hash, replacing the branch-name placeholder.

This commit lands on the PR-1B branch (fix/pr1b-remove-save-skill-and-forge)
so the citation travels with PR-1B's next merge.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* fix(config): handle headless ImportError on pynput gracefully

CI failure root cause for PR-1A (#42) and PR-1B (#43): the smoke job
on Ubuntu runners failed at test collection because importing
codec_skill_registry → codec_config → `from pynput import keyboard`
raised ImportError on a headless display:

    ImportError: this platform is not supported:
    ('failed to acquire X connection: Bad display name ""')

pynput needs a real display (X11 / AppKit / win32). GitHub Actions
Linux runners are headless. Other modules import codec_config for
its constants and is_dangerous_skill_code — none of them need the
keyboard subsystem.

Fix: wrap the pynput import in try/except so codec_config is import-
safe in headless contexts. The two `getattr(keyboard.Key, ...)` call
sites in `_resolve_key` now early-return None when keyboard is None
(the resulting KEY_TOGGLE / KEY_VOICE / KEY_TEXT module constants
are None on headless systems — only matters if the live keyboard
listener actually runs, which it doesn't in CI).

This was triggered by the new PR-1A test
`tests/test_skill_registry.py` which CI now runs per the new
`Skill registry load-time AST gate tests (D-1)` step. Before PR-1A,
no CI-gated test imported codec_config, so the pynput crash was
latent. Production paths (codec.py daemon, dashboard, etc.) all
run on macOS where pynput imports fine.

Verified locally:
- pytest tests/test_skill_routes.py tests/test_skill_registry.py
  tests/test_skill_contracts.py tests/test_oauth_provider.py
  tests/test_retry.py → 28 passed
- python3 tests/test_skill_imports.py → 76 skills parsed, 0 errors
- python3 tools/generate_skill_manifest.py --check → ok
- Headless simulation: monkey-patch builtins.__import__ to raise on
  pynput, then `from codec_config import is_dangerous_skill_code` →
  succeeds, returns (True, 'Dangerous import: subprocess') correctly.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

---------

Co-authored-by: Mickael Farina <farina.mickael@gmail.com>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
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