Grafana gzip

Author: Aitem

bootstrap.sql

@@ -1,13 +1,16 @@
 ---- db: -h localhost -p 5488 -U postgres devbox
 \d+ patient
 ----
+select id from patient;
+----
 \c devbox
 CREATE EXTENSION IF NOT EXISTS timescaledb CASCADE;
 ----
 DROP VIEW if exists hr_view CASCADE;
 DROP VIEW if exists pulse_view CASCADE;
 DROP VIEW if exists resp_view CASCADE;
 DROP VIEW if exists oxy_view CASCADE;
+----
 
 DROP table if exists observation_data;
 
@@ -68,6 +71,15 @@ SELECT create_hypertable('observation_data', 'ts');
 SELECT add_dimension('observation_data', 'Patient_id',     number_partitions => 200, if_not_exists => true);
 SELECT add_dimension('observation_data', 'Observation_id', number_partitions => 200, if_not_exists => true);
 
+----
+\d+ observation_data
+----
+
+SELECT
+pid ,wait_event, age(clock_timestamp(), query_start) ,query
+FROM pg_stat_activity
+WHERE query != '<IDLE>' AND query NOT ILIKE '%pg_stat_activity%'  and "state" = 'active'
+ORDER BY query_start  nulls last;
 ----
 \x
 select count(*)
@@ -87,32 +99,14 @@ from observation_data;;
 \x
 select * from  observation_data limit 1;
 ----
+----
 DROP VIEW if exists hr_view CASCADE;
 DROP VIEW if exists pulse_view CASCADE;
 DROP VIEW if exists resp_view CASCADE;
 DROP VIEW if exists oxy_view CASCADE;
 
 truncate observation_data;
 ----
-select patient_id, (array_agg(smooth_bpm))[1]
-from (
-SELECT
-  ts,
-  Patient_id,
-  AVG(valueQuantity_value) OVER(
-    PARTITION BY Patient_id
-    ORDER BY ts
-    ROWS BETWEEN 60 PRECEDING AND CURRENT ROW
-  )
-  AS smooth_bpm
-FROM observation_data
-WHERE code = '8867-4' -- heart rate
-  and ts > NOW() - INTERVAL '1 minute'
-  --and smooth_bpm > 90
-ORDER BY ts DESC
-) as avgg
-where avgg.smooth_bpm > 100
-group by patient_id;
 ----
 SELECT
   time_bucket('10s', ts) as bucket,
@@ -141,8 +135,10 @@ FROM
   observation_data
 
 ----
+----------------------------------------------------------------------
 DROP VIEW if exists hr_view CASCADE;
 
+
 CREATE VIEW hr_view WITH
 (timescaledb.continuous, timescaledb.refresh_interval = '30s')
 AS
@@ -197,6 +193,22 @@ WHERE code = '2708-6' -- resp
 group by patient_id, time_bucket('10s', ts)
 HAVING AVG(valueQuantity_value) < 96
 
+----
+explain analyze
+SELECT ts AS "time"
+, valuesampleddata_data I
+FROM observation_data
+where code = '131329'
+--and ts BETWEEN (1601823599500)::timestamp AND (1601823610500)::timestamp
+and ts BETWEEN '2020-10-04T14:59:59.500Z' AND '2020-10-04T15:00:10.500Z'
+and patient_id = 'bfd8ecb3-06dd-8f08-7121-020a9a589602'
+order by ts
+--limit 1000
+
+----
+create index obsdatacode on observation_data (code);
+----
+analyze observation_data;
 ----
 \x
 SELECT * FROM timescaledb_information.continuous_aggregate_stats;

device_imitator/src/device/core.clj

@@ -10,12 +10,31 @@
 
 (def config
   {:box-url "http://localhost:8888"
-   :jobs {:j1 {:patient-id "333"
+   :jobs {:j1 {:patient-id "bb1cf28f-b3b6-5a90-22f3-71dcecb6fad5"
                :dataset-path  "resources/csv/bidmc_01_Numerics.csv"}
-          :j2 {:patient-id "123"
-               :dataset-path  "resources/csv/bidmc_02_Numerics.csv"}}})
-
-
+          :j2 {:patient-id "bf16eed6-d4f0-c2f4-9ab4-788f458de47b"
+               :dataset-path  "resources/csv/bidmc_02_Numerics.csv"}
+          :j3 {:patient-id "bfd8ecb3-06dd-8f08-7121-020a9a589602"
+               :dataset-path  "resources/csv/bidmc_03_Numerics.csv"}
+          :j4 {:patient-id "eb277a4d-4a42-7905-5576-d92a9a3fda9c"
+               :dataset-path  "resources/csv/bidmc_04_Numerics.csv"}
+          :j5 {:patient-id "e490c516-7f1e-7910-44d4-0ba0fe542b31"
+               :dataset-path  "resources/csv/bidmc_05_Numerics.csv"}
+          :j6 {:patient-id "e2d08a03-e382-c8cf-bc7a-474277238b3b"
+               :dataset-path  "resources/csv/bidmc_06_Numerics.csv"}
+          :j7 {:patient-id "e1ed357c-6753-fe21-f98d-2e5996966ff2"
+               :dataset-path  "resources/csv/bidmc_07_Numerics.csv"}
+          :j8 {:patient-id "e490c516-7f1e-7910-44d4-0ba0fe542b31"
+               :dataset-path  "resources/csv/bidmc_08_Numerics.csv"}
+          :j9 {:patient-id "dd178782-f1bd-7487-e670-32e02d2c8396"
+               :dataset-path  "resources/csv/bidmc_09_Numerics.csv"}
+          :j10 {:patient-id "d5743f3a-b161-67db-d952-983f5544f7a7"
+               :dataset-path  "resources/csv/bidmc_10_Numerics.csv"}
+          :j11 {:patient-id "c81ef392-ed3f-e948-ac90-2e643346ed2d"
+               :dataset-path  "resources/csv/bidmc_11_Numerics.csv"}
+          :j12 {:patient-id "bffc6742-0671-0f7f-3837-d3ecdbb31e8b"
+               :dataset-path  "resources/csv/bidmc_12_Numerics.csv"}
+          }})
 
 (defn configure [n]
   {:box-url "http://localhost:8888"
@@ -159,7 +178,8 @@
 
   (parse-csv  "resources/csv/bidmc_01_Numerics.csv")
 
-  (run-jobs (configure 50))
+  #_(run-jobs (configure 50))
+  (run-jobs config)
 
   (prn 1)
 

docker-compose.dev.yml

@@ -41,6 +41,7 @@ services:
     environment:
       GF_SECURITY_ALLOW_EMBEDDING: "true"
       GF_AUTH_ANONYMOUS_ENABLED:   "true"
+      GF_SERVER_ENABLE_GZIP: "true"
     volumes:
       - "./grafanadata:/var/lib/grafana"
     ports:

ui/src/app/pages/index/view.cljs

@@ -22,26 +22,4 @@
             " "
             (get-in p [:name 0 :family])
             ]]
-          ]]
-
-
-        )]]
-
-
-
-    [:div.col-md-12
-     [:iframe
-      {:src "http://localhost:3000/d-solo/rb_qDpxGz/new-dashboard-copy?orgId=1&from=1591109999882&to=1591110010126&var-Patient=33b9e41c-6a40-4b8c-948f-e69f5a35da8d&panelId=9"
-       :height "500px"
-       :width  "100%"
-       :frameborder   "0"}]]
-
-    [:div.col-md-6
-     [:div.bd
-
-      [:iframe
-       {:src "http://localhost:3000/d-solo/rb_qDpxGz/new-dashboard-copy?orgId=1&from=1608823166525&to=1608823640459&var-Patient=43284e5d-c335-431e-a5df-d5b93badacc3&panelId=2"
-        :height "300px"
-        :width  "100%"
-        :frameborder   "0"}]]]]
-   ))
+          ]])]]]))