Getting Value Error

[nitinkumar070]

ValueError: The two structures don't have the same sequence length. Input structure has length 4, while shallow structure has length 3.
Getting this error after running the code. #

[Akhilesh64]

@nitinkumar070 Please follow the training procedure listed in the repo. I am able to run the training without an issue on google colab following the procedure.

[nitinkumar070]

I am trying to run in my command prompt, with all requirement but some requirement is of updated version. Still i am getting value error.

[nitinkumar070]

Hello, In google colab, I am getting this error message. I want to know which python version you are using. As i discussed earlier, in my command prompt i am getting ValueError. ValueError: The two structures don't have the same sequence length. Input structure has length 4, while shallow structure has length 3. Please solve my issue as early as possible. Thanks and Regards, Nitin Kumar +91-7723016169

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________________________________ From: Akhilesh Sharma ***@***.***> Sent: Thursday, June 16, 2022 11:19 AM To: Akhilesh64/ResUnet-a ***@***.***> Cc: Nitin Kumar ***@***.***>; Mention ***@***.***> Subject: Re: [Akhilesh64/ResUnet-a] Getting Value Error (Issue #5) @nitinkumar070<https://github.com/nitinkumar070> Please follow the training procedure listed in the repo. I am able to run the training without an issue on google colab following the procedure. [Untitled]<https://user-images.githubusercontent.com/36566307/174000449-d7a3152f-ff3b-44a8-ad28-c91254f2b5a6.png> — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AYPJWBVEL6B56NNRGTKGNZLVPK563ANCNFSM5Y4KLKGQ>. You are receiving this because you were mentioned.Message ID: ***@***.***>

[nitinkumar070]

Hi, I followed all these steps, still getting the same error. ValueError: The two structures don't have the same sequence length. Input structure has length 4, while shallow structure has length 3. Thanks and regards, Nitin Kumar +91-7723016169

…

________________________________ From: Akhilesh Sharma ***@***.***> Sent: Thursday, June 16, 2022 11:19 AM To: Akhilesh64/ResUnet-a ***@***.***> Cc: Nitin Kumar ***@***.***>; Mention ***@***.***> Subject: Re: [Akhilesh64/ResUnet-a] Getting Value Error (Issue #5) @nitinkumar070<https://github.com/nitinkumar070> Please follow the training procedure listed in the repo. I am able to run the training without an issue on google colab following the procedure. [Untitled]<https://user-images.githubusercontent.com/36566307/174000449-d7a3152f-ff3b-44a8-ad28-c91254f2b5a6.png> — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AYPJWBVEL6B56NNRGTKGNZLVPK563ANCNFSM5Y4KLKGQ>. You are receiving this because you were mentioned.Message ID: ***@***.***>

[murdav]

@nitinkumar070 @Akhilesh64
Did you solve it?
I also have the same exact issue.

I launch the training having num_classes = 3 and not --num_classes 2 as in python main.py *** because I need to predict

loss = Tanimoto_dual_loss()
loss_fn = {'segmentation': loss, 'boundary': loss, 'distance': loss}

[kcsumesh]

I believe, the error is likely from the inconsistency in the dictionary (key).

In model.py file (line 131), seg, bound and dist keys are used.

model = Model(inputs = input, outputs={'seg': seg, 'bound': bound, 'dist': dist})

In batch_preprocess.py file (line 64-66), segmentation, boundary and distance keys are used.

labels = {'segmentation': np.asarray(seg)}
labels['boundary'] = np.asarray(bound)
labels['distance'] = np.asarray(dist)

In main.py file (line 17), segmentation, boundary and distance keys are used.

losses = {'segmentation': loss, 'boundary': loss, 'distance': loss}