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A molecularly defined and spatially resolved cell atlas of the whole mouse brain (Xiaowei Zhuang)

  • 4.2 million cell spatial transcriptomics dataset spanning 147 coronal sections with a 1122 gene panel and mapped to the whole mouse brain taxonomy and Allen CCFv3 (Zhuang-ABCA-1; 2.8 million cells passed cell classification confidence score threshold and displayed in the ABC atlas)
  • 1.9 million cell spatial transcriptomics dataset spanning 66 coronal sections with a 1122 gene panel and mapped to the whole mouse brain taxonomy and Allen CCFv3 (Zhuang-ABCA-2; 1.2 million cells passed cell classification confidence score threshold and displayed in the ABC atlas)
  • 2.1 million cell spatial transcriptomics dataset spanning 23 sagittal sections with a 1122 gene panel and mapped to the whole mouse brain taxonomy and Allen CCFv3 (Zhuang-ABCA-3; 1.6 million cells passed cell classification confidence score threshold and displayed in the ABC atlas)
  • 0.22 million cell spatial transcriptomics dataset spanning 3 sagittal sections with a 1122 gene panel and mapped to the whole mouse brain taxonomy and Allen CCFv3 (Zhuang-ABCA-4; 0.16 million cells passed cell classification confidence score threshold and displayed in the ABC atlas)