From 2fee9ffa4c00615e7782cc81f5240c484249bd15 Mon Sep 17 00:00:00 2001 From: Christopher Morrison Date: Wed, 20 Mar 2024 10:38:37 -0700 Subject: [PATCH] Update links in notebooks after merge to main. --- notebooks/general_accessing_10x_snRNASeq_tutorial.ipynb | 2 +- notebooks/getting_started.ipynb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/notebooks/general_accessing_10x_snRNASeq_tutorial.ipynb b/notebooks/general_accessing_10x_snRNASeq_tutorial.ipynb index c5830d8..c7a38c0 100644 --- a/notebooks/general_accessing_10x_snRNASeq_tutorial.ipynb +++ b/notebooks/general_accessing_10x_snRNASeq_tutorial.ipynb @@ -623,7 +623,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Below is a function that can be used to load specific genes from the from the full set of data in the WHB dataset. Adjust the chunk size down if you find your system still running out of memory. Additionally, reduce the number of genes if you still have issues. Note that the funciton can load either the raw expression data or the log2 data. The full code of this function can be found [here](https://github.com/AllenInstitute/abc_atlas_access/blob/4c4a7dfb124971b543de2cb737d059e7cabd620a/src/abc_atlas_access/abc_atlas_cache/anndata_utils.py#L9)" + "Below is a function that can be used to load specific genes from the from the full set of data in the WHB dataset. Adjust the chunk size down if you find your system still running out of memory. Additionally, reduce the number of genes if you still have issues. Note that the funciton can load either the raw expression data or the log2 data. The full code of this function can be found [here](https://github.com/AllenInstitute/abc_atlas_access/blob/7a53a08cff0f07e9b67911c0db04fa6932fa6e9d/src/abc_atlas_access/abc_atlas_cache/anndata_utils.py#L9)" ] }, { diff --git a/notebooks/getting_started.ipynb b/notebooks/getting_started.ipynb index 94b75d1..df30b21 100644 --- a/notebooks/getting_started.ipynb +++ b/notebooks/getting_started.ipynb @@ -105,7 +105,7 @@ } ], "source": [ - "pip install -U git+https://github.com/alleninstitute/abc_atlas_access@u/morriscb/updateJupyterBook" + "pip install -U git+https://github.com/alleninstitute/abc_atlas_access" ] }, {