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committedMay 22, 2015
Initial skeleton report
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‎.gitignore

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# Associated files
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references/
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# Temp files
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*.aux
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*.bbl
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*.brf
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*.glo
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*.gls
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*.xdy
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*.toc
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*.lof
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*.lot
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*.out
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*.*.swp
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*.ist
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*.dvi
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*.bib.x
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*.cache
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*.txt
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# Log files
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*.blg
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*.log
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*.glg
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# Finished output
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img
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*.pdf

‎Makefile

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#!/usr/bin/make -f
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#
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# Makefile for pdflatex projects using bibtex for references
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#
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# Timothy Brooks 2012 <brooks@cern.ch>
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#
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SHELL = /bin/bash
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latexfile = report
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pdffile = technicalreport2015
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tex_dir = tex_src
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bib_dir = bib
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fig_dir = figures
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img_dir = img
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img_src_dir = img_src
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bibstyle = styles/my-lim-num.bst
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TEX = pdflatex -halt-on-error -file-line-error
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BIB = bibtex -terse
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GLS = makeglossaries
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HAVE_RUBBER = "$(shell rubber --version 2> /dev/null)"
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tex = $(wildcard $(tex_dir)/*.tex) $(latexfile).tex
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tex += $(wildcard $(fig_dir)/*.tex)
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bib = $(wildcard $(bib_dir)/*.bib)
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img = $(patsubst $(img_src_dir)/%.svg, $(img_dir)/%.png, $(wildcard $(img_src_dir)/*.svg))
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img += $(patsubst $(img_src_dir)/%.eps, $(img_dir)/%.pdf, $(wildcard $(img_src_dir)/*.eps))
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img += $(patsubst $(img_src_dir)/%.png, $(img_dir)/%.png, $(wildcard $(img_src_dir)/*.png))
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img += $(patsubst $(img_src_dir)/%.pdf, $(img_dir)/%.pdf, $(wildcard $(img_src_dir)/*.pdf))
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ifneq ($(HAVE_RUBBER), "")
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deps = $(tex) $(bib) $(img)
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else
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deps = $(latexfile).aux $(latexfile).bbl $(latexfile).gls
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endif
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.PHONY: all, rubber, pdflatex, latex
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all: $(pdffile).pdf
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test: test_figures.pdf
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ifneq ($(HAVE_RUBBER),"")
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$(pdffile).pdf: rubber
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else
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$(pdffile).pdf: pdflatex
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endif
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rubber: $(deps)
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rubber --pdf $(latexfile).tex
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rubber-info --check $(latexfile).tex
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mv $(latexfile).pdf $(pdffile).pdf
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pdflatex: $(deps)
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PDFwords="NONE" ;\
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while [ "$${oldPDFwords}" != "$${PDFwords}" ] ; do \
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oldPDFwords=$${PDFwords} ;\
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$(TEX) $(latexfile) ;\
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PDFwords=`tail -n2 have_gls.log | head -n1 | cut -d" " -f2` ;\
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done
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mv $(latexfile).pdf $(pdffile).pdf
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# $(MAKE) tmpclean
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latex: $(deps)
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latex $(latexfile)
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dvipdf $(latexfile)
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test_figures.pdf: test_figures.tex $(tex) images
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ifneq ($(HAVE_RUBBER),"")
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rubber --pdf -f $<
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rubber-info --check $<
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else
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$(TEX) $<
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endif
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$(latexfile).aux: $(img) $(tex)
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$(TEX) $(latexfile)
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$(latexfile).bbl: $(bib) | $(latexfile).aux $(bibstyle)
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$(BIB) $(latexfile)
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$(latexfile).glo: $(tex) | $(latexfile).bbl
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$(TEX) $(latexfile)
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$(latexfile).gls: $(tex) | $(latexfile).glo
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$(GLS) $(latexfile)
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$(img_dir)/%.png: $(img_src_dir)/%.svg | $(img_dir)
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inkscape --without-gui --file=$< --export-png=$@ --export-area-drawing
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$(img_dir)/%.pdf: $(img_src_dir)/%.eps | $(img_dir)
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epstopdf $< -o $@
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$(img_dir)/%.png: $(img_src_dir)/%.png | $(img_dir)
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ln -fs ../$< $@
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$(img_dir)/%.pdf: $(img_src_dir)/%.pdf | $(img_dir)
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ln -fs ../$< $@
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$(img_dir):
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mkdir -p $(img_dir)
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images: $(img)
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clean: tmpclean
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rm -f $(latexfile).aux $(latexfile).bbl $(latexfile).glo $(latexfile).gls $(latexfile).brf
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rm -f $(pdffile).pdf
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tmpclean: logclean
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rm -f $(latexfile).lof $(latexfile).lot $(latexfile).nav $(latexfile).out $(latexfile).snm $(latexfile).toc $(latexfile).xdy
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logclean:
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rm -f $(latexfile).log $(latexfile).blg $(latexfile).glg
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imgclean:
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rm -f $(img)

‎bib/report.bib

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‎img_src/LogoBadge.eps

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‎report.tex

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% rubber: onchange report.glo 'makeglossaries report'
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% rubber: watch report.glo
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\documentclass[11pt,a4paper,oneside,notitlepage]{report}
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% \newcommand{\draft}
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\newif\ifdraft{}
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\drafttrue{}
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\usepackage{url}
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%\usepackage{feynmp}
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%\DeclareGraphicsRule{*}{mps}{*}{}
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\usepackage[UKenglish]{babel}
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\usepackage{pslatex}
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\usepackage{a4wide}
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\usepackage{graphics}
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\usepackage{amsmath, amssymb, amsthm, latexsym}
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\usepackage{braket}
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\usepackage{notoccite}
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\usepackage{slashed}
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\NeedsTeXFormat{LaTeX2e}
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\usepackage{setspace}
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\usepackage{subcaption}
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\usepackage{color}
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\usepackage{multirow}
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\usepackage{fancyhdr}
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\usepackage{fancyvrb} %For verbatim commands SaveVerb, UseVerb
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% \usepackage[small]{caption} %caption settings [normal] bf,up
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\usepackage{eso-pic}
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\usepackage[pdftex]{graphicx}
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\usepackage{wasysym}
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\usepackage{tikz}
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\usepackage{tikz-3dplot}
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\usetikzlibrary{arrows,shapes,patterns,decorations.pathmorphing,decorations.markings}
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\usepackage{pgfplots}
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\pgfplotsset{compat=1.10}
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\usepackage{type1cm}
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\usepackage{hyperref}
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\usepackage[all]{hypcap}
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\usepackage{datatool} % For glossaries package, below
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\usepackage[toc]{glossaries}
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\usepackage{pdflscape} % For the sidewaystable environment
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\usepackage[binary-units]{siunitx}
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\usepackage{dcolumn}
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%\usepackage{feynmf}
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%\usepackage{dot2texi}
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\usepackage[capitalize]{cleveref}
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\newcolumntype{d}[1]{D{.}{.}{#1} } % Decimal column type with #1 figures
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\ifdraft{}
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\usepackage{lineno}
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\newcommand\note[1]{\textcolor{red}{#1}}
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\else
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\newcommand\note[1]{}
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\fi
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\hypersetup{pdfauthor={Timothy Brooks, Candan Dozen},
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pdftitle={Technical report 2015},
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pdfsubject={BeamLine for Schools 2015 project technical report},
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pdfkeywords={BL4S} {Beamline} {HEP} {Particle Physics} {DAQ},
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plainpages=false,
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colorlinks,
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linkcolor=blue,
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citecolor=red}
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\tikzset{
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photon/.style={decorate, decoration={snake,amplitude=2pt, segment length=5pt}},
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particle/.style={postaction={decorate}, decoration={markings,mark=at position .5 with {\arrow{>}}}},
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antiparticle/.style={postaction={decorate}, decoration={markings,mark=at position .5 with {\arrow{<}}}},
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gluon/.style={decorate, decoration={coil,amplitude=3pt, segment length=5pt}},
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gaugino/.style={decorate, decoration={snake,amplitude=2pt, segment length=5pt,markings,mark=at position .5 with {\arrow{>}}}},
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antigaugino/.style={decorate, decoration={snake,amplitude=2pt, segment length=5pt,markings,mark=at position .5 with {\arrow{<}}}}
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}
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\makeglossaries{}
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\graphicspath{{./img/}}
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\setlength{\headheight}{14pt}
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\setlength{\oddsidemargin}{940mm} %0.5
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\setlength{\evensidemargin}{-3.25 in}
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\setlength{\textwidth}{150mm} %5.93in
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\ifdraft{}
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\overfullrule=5pt
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\fi
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% Fix abstract to use normal fonts
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\usepackage[]{abstract}
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\renewcommand{\abstractnamefont}{\normalfont\Huge\bfseries}
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\renewcommand{\abstracttextfont}{\normalfont}
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\doublespacing{}
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\pagestyle{fancy}
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\addtolength{\headwidth}{\marginparsep}
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% remember chapter title
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\renewcommand{\chaptermark}[1]{\markboth{#1}{}}
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% section number and title
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\renewcommand{\sectionmark}[1]{\markright{\thesection\ #1}{}}
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\if@twoside
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\fancyfoot[RO,RE]{\thepage}
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\else
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\fancyfoot[RO]{\thepage}
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\fi
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\fancyhead[RO]{\leftmark}
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\fancyhead[LO]{\rightmark}
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\cfoot{}
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\fancypagestyle{plain}{\renewcommand{\headrulewidth}{1pt}%
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\renewcommand{\plainfootrulewidth}{0pt}%
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\fancyhead[RO,LO]{}}
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\renewcommand{\baselinestretch}{1.5}
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% Command to force a long glossary entry, regardless of earlier usage
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\newcommand{\glslong}[1]{\glsreset{#1}\gls{#1}}
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\newcommand{\glspllong}[1]{\glsreset{#1}\glspl{#1}}
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\newcommand{\Glslong}[1]{\glsreset{#1}\Gls{#1}}
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\newcommand{\Glspllong}[1]{\glsreset{#1}\Glspl{#1}}
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%====
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%Insert to print the word ``draft'' across page
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\makeatletter
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\protected@write\@auxout{}{\string\@xdylanguage{main}{english}}%
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\def\input@path{{./tex_src/}{./figures/}}
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\ifdraft{}
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\AddToShipoutPicture{%
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\setlength{\@tempdimb}{.5\paperwidth}%
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\setlength{\@tempdimc}{.5\paperheight}%
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\setlength{\unitlength}{1pt}%
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\put(\strip@pt\@tempdimb,\strip@pt\@tempdimc){%
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\makebox(0,0){\rotatebox{45}{\textcolor[gray]{0.9}{\fontsize{5cm}{5cm}\selectfont{}}}}
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}
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}
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\fi
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\makeatother
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%----
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\oddsidemargin 1.36cm
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\textwidth 14.7cm
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\setlength{\unitlength}{1mm}
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% Input definitions for glossary
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\input{terms}
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\SaveVerb{isem}|isEM|
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\begin{document}
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\ifdraft{}
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\linenumbers{}
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\fi
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%\begin{fmffile}{fgraphs}
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% Switch to roman numerals for frontmatter
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\pagenumbering{roman}
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\begin{titlepage}
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\thispagestyle{empty}
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\input{title}
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\end{titlepage}
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\fancyhead[LO]{}
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\begin{abstract}
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\thispagestyle{empty}
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\input{abstract}
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\pagebreak
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\end{abstract}
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\setcounter{tocdepth}{4} % Include all the way down to subsections in ToC
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\tableofcontents
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\ifdraft{}
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\else{
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\listoffigures
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\listoftables
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}\fi
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\newpage
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% Switch back to arabic numerals
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\pagenumbering{arabic}
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%Main text goes in chapters
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\fancyhead[LO]{\rightmark}
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\input{introduction}
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\appendix
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\newpage
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\addcontentsline{toc}{chapter}{Bibliography}
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\fancyhead[LO]{}
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\bibliographystyle{style/my-lim-num}
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\bibliography{bib/report}
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\newpage
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\printglossary{}
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%\end{fmffile}
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\end{document}
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% vim: path+=./tex_src/,

‎style/my-lim-num.bst

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‎tex_src/abstract.tex

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{\color{red} TODO}

‎tex_src/introduction.tex

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\markboth{Introduction}{}
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\chapter{Introduction}\label{chp:introduction}
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{\color{red} TODO}\cite{bib:higgsatlas,bib:higgscms}

‎tex_src/terms.tex

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\newacronym{sm}{SM}{Standard Model}
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\newacronym{bsm}{BSM}{Beyond the Standard Model}
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\newacronym{em}{EM}{Electro--Magnetism}
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\newacronym{rf}{RF}{Radio--Frequency}
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\newacronym{ew}{EW}{Electro--Weak}
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\newacronym{qed}{QED}{Quantum Electro--Dynamics}
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\newacronym{qcd}{QCD}{Quantum Chromo--Dynamics}
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\newacronym{dm}{DM}{Dark Matter}
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\newacronym{susy}{SUSY}{Supersymmetry}
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\newacronym{mssm}{MSSM}{Minimal Super-Symmetric Model}
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\newacronym{ckm}{CKM}{Cabbibo–-Kobayashi–-Maskawa}
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\newacronym{mva}{MVA}{Multi-Variate Analysis}
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\newacronym{hepp}{HEPP}{High Energy Particle Physics}
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\newacronym{gpd}{GPD}{General Purpose Detector}
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\newacronym{ir}{IR}{Interaction Region}
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\newacronym{ip}{IP}{Interaction Point}
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\newacronym{pmt}{PMT}{Photo-Multiplier Tube}
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\newacronym{kde}{KDE}{Kernal Density Estimator}
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\newacronym{mc}{MC}{Monte Carlo}
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\newacronym{ml}{ML}{Maximum Likelihood}
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% \newglossaryentry{pdf}{name=PDF, description={\nopostdesc}}
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% \newglossaryentry{pardf}{first={Parton Distribution Function (PDF)}, sort={1}, parent={pdf}}
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% \newglossaryentry{probdf}{first={Probability Density Function (PDF)}, sort={2}, parent={pdf}}
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\newacronym{pardf}{PDF}{Parton Distribution Function}
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\newacronym{probdf}{PDF}{Probability Density Function}
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\newacronym{sct}{SCT}{Semi-Conductor Tracker}
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\newacronym{trt}{TRT}{Transition Radiation Tracker}
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\newacronym{lar}{LAr}{Liquid Argon}
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\newacronym{ms}{MS}{Muon Spectrometer}
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\newacronym{csc}{CSC}{Cathode Strip Chamber}
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\newacronym{tgc}{TGC}{Thin Gap Chamber}
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\newacronym{rpc}{RPC}{Resistive Plate Chamber}
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\newacronym{mdt}{MDT}{Monitored Drift Tube}
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\newacronym{l1}{L1}{Level 1 trigger}
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\newacronym{hlt}{HLT}{High Level Trigger}
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\newacronym{l2}{L2}{Level 2 trigger}
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\newacronym{ef}{EF}{Event Filter}
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\newacronym{ros}{ROS}{Read Out Subsystem}
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\newacronym{ctp}{CTP}{Central Trigger Processor}
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\newacronym{fifo}{FIFO}{First In First Out}
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\newacronym{vp1}{VP1}{Virtual Point 1 \cite{bib:VP1}}
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\newglossaryentry{ip3d}{name=IP3D, description={\gls{atlas} impact parameter based B-tagging algorithm}}
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\newglossaryentry{sv1}{name=SV1, description={\gls{atlas} high performance Secondary Vertex B-tagging algorithm}}
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\newglossaryentry{impact parameter}{name={impact parameter}, description={TODO: FILL THIS IN}}
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% \newglossaryentry{}{}
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% \newacronym{}{}{}
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\newglossaryentry{cern}{name=CERN, description={ - The European Organization for Nuclear Research}}
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\newacronym{lhc}{LHC}{Large Hadron Collider}
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\newacronym{sps}{SPS}{Super Proton Synchrotron}
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\newacronym{ps}{PS}{Proton Synchrotron}
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\newacronym{psb}{PSB}{Proton Synchrotron Booster}
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\newglossaryentry{atlas}{name=ATLAS, description={A Toroidal LHC ApparatuS}}
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\newglossaryentry{cms}{name=CMS, description={Compact Muon Solenoid}}
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\newglossaryentry{lhcb}{name=LHCb, description={LHC beauty}}
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\newglossaryentry{alice}{name=ALICE, description={A Large Ion Collider Experiment}}
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\newacronym{grl}{GRL}{Good Runs List}
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\newglossaryentry{hits}{name=hits, description={ - Data format describing detector respose to a collision event.}}
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\newglossaryentry{bs}{name=BS, first={ByteStream (BS)}, description={Data as output by the detector readout}}
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\newglossaryentry{raw}{name=RAW, description={ - File format packaging all detector level data}}
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\newglossaryentry{esd}{name=ESD, first={Event Summary Data (ESD)}, description={Event Summary Data - File type including most detector level data and reconstructed physics objects}}
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\newglossaryentry{aod}{name=AOD, first={Analysis Object Data (AOD)}, description={Analysis Object Data - File type including detailed reconstructed physics objects}}
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\newglossaryentry{dpd}{name=DPD, first={Derived Physics Data (DPD)}, description={Derived Physics Data - File type including reconstructed physics objects for final analysis}}
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\newglossaryentry{d2pd}{name=D2PD, first={doubly Derived Physics Data (D2PD)}, description={Derived Physics Data - File type including a reduced set of reconstructed physics objects}}
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\newglossaryentry{d3pd}{name=D3PD, first={triply Derived Physics Data (D3PD)}, description={Derived Physics Data - Flat file format including a reduced set of reconstructed physics objects}}
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\newacronym{l2pu}{L2PU}{Level 2 Processing Unit}
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\newacronym{l2sv}{L2SV}{Level 2 Supervisor}
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\newacronym{roi}{ROI}{Region of Interest}
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\newacronym{ttc}{TTC}{Trigger Timing and Control}
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\newacronym{rod}{ROD}{Read-Out Driver}
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\newglossaryentry{robin}{name=ROBIN, description={INput Read-Out Buffer}}
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% \newacronym{}{}{}
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\newacronym{lcw}{LCW}{Local Cluster Weighting}
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\newacronym{fsi}{FSI}{Frequency Scanning Interferometry}
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\newglossaryentry{muid}{name=MuID, description={Algorithm to refit a muon track from hits}}
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\newglossaryentry{staco}{name=STACO, description={Algorithm to statistically combine muon measurements}}
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\newacronym{id}{ID}{Inner Detector}
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\newglossaryentry{ecal}{name=ECal, first={Electro-magnetic Calorimeter (ECal)}, description={Electro-magnetic Calorimeter}}
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\newglossaryentry{mbts}{name=MBTS, first={Minimum Bias Trigger Scintillator (MBTS)}, description={Minimum Bias Trigger Scintillator - Scintillating tracker in the forward region, mainly for collision detection}}
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\newglossaryentry{emcal}{name=EM, first={Electro--Magnetic (EM)}, description={ - The ATLAS Electro--Magnetic calorimetry}}
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% \newglossaryentry{hec}{name={HEC}, first={Hadronic End-cap Calorimeter (HEC)}, description={ - Liquid Argon Calorimeter}}
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\newacronym{hec}{HEC}{Hadronic End-cap Calorimeter}
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\newglossaryentry{fcal}{name={FCal}, first={Forward Calorimeter (FCal)}, description={ - The ATLAS Forward Calorimeter}}
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\newglossaryentry{tilecal}{name=Tilecal, description={ - The ATLAS Scintillating Tile Calorimeter}}
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\newglossaryentry{trigger}{name=Trigger, description={ - The event selection apparatus}}
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\newglossaryentry{daq}{name=DAQ, first={Data AcQuisition (DAQ)}, description={Data AcQuisition}}
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\newglossaryentry{mcviz}{name=MCViz, description={ - HEP Monte Carlo Visualizer\cite{bib:MCViz}}}
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\newglossaryentry{geant}{name=Geant, description={ - Toolkit for the simulation of the passage of particles through matter}}
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\newglossaryentry{pt}{name=\ensuremath{p_T}, first={transverse momentum (\ensuremath{p_T})}, description={ - Transverse momentum}}
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\newglossaryentry{et}{name=\ensuremath{E_T}, first={transverse energy (\ensuremath{\slashed{E}_T})}, description={ - Transverse energy}}
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\newglossaryentry{ptmiss}{name=\ensuremath{\slashed{p}_T}, sort=pt miss, first={missing transverse momentum (\ensuremath{\slashed{p}_T})}, description={ - Missing transverse momentum}}
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\newglossaryentry{etmiss}{name=\ensuremath{\slashed{E}_T}, sort=et miss, first={missing transverse energy (\ensuremath{\slashed{E}_T})}, description={ - Missing transverse energy}}
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\newglossaryentry{meff}{name=\ensuremath{M_{eff}}, sort=effective mass, first={effective mass (\ensuremath{M_{eff}})}, description={ - Effective mass}}
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\newglossaryentry{mt}{name=\ensuremath{M_T}, sort=transverse mass, first={transverse mass (\ensuremath{M_T})}, description={ - Transverse mass}}
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\newglossaryentry{sumet}{name=\ensuremath{\sum{E}_T}, sort=sum et, first={summed transverse energy (\ensuremath{\sum{E}_T})}, description={ - Summed transverse energy}}
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\newacronym{jvf}{JVF}{Jet Vertex Fraction}
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\newglossaryentry{phi}{name=\ensuremath{\phi}, sort=phi, description={ - The azimuthal angle around the beam}}
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\newglossaryentry{ttbar}{name=\ensuremath{t\bar{t}}, first={top-anti top (\ensuremath{t\bar{t}})}, description={top-anti top}}
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\newacronym{lsp}{LSP}{Lightest Super Particle}
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\newacronym{df}{DF}{Different Flavour}
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\newacronym{sf}{SF}{Same Flavour}
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\newglossaryentry{neutralino}{name=neutralino, first=neutral gauge fermion (neutralino), description={ - neutral gauge fermion}}
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\newglossaryentry{chargino}{name=chargino, first=charged gauge fermion (chargino), description={ - charged gauge fermion}}
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\newglossaryentry{gluino}{name=gluino, first=fermionic gluon (gluino), description={ - Scalar gluon}}
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\newglossaryentry{slepton}{name=slepton, first=scalar lepton (slepton), description={ - Scalar lepton}}
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\newglossaryentry{squark}{name=squark, first=scalar quark (squark), description={ - Scalar quark}}
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\newglossaryentry{sneutrino}{name=sneutrino, first=scalar neutrino (sneutrino), description={ - Scalar neutrino}}
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% \newglossaryentry{sparticle}{name=sparticle, first=supersymmetric particle, description={ - Scalar particle}}
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%\newglossaryentry{}{name=, description={}}

‎tex_src/title.tex

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\begin{center}
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{\LARGE Beamline for Schools 2015\\}
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\vspace{2cm}
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{\Large Timothy Brooks, Candan Dozen\\}
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\end{center}
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\vspace{1cm}
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\capstartfalse{}
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\begin{figure}[ht]
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\begin{center}
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\includegraphics[scale=0.5]{LogoBadge}
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\end{center}
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\end{figure}
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\begin{center}
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\vspace{2cm}
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{\LARGE Project technical report\\}
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\vspace{1cm}
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{\today\\}
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\end{center}

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