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add env
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‎exercise_13_fine_tune_plm/env.yml‎

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name: llm_bioinfo
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channels:
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- anaconda
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- conda-forge
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- bioconda
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- defaults
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dependencies:
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- _libgcc_mutex=0.1=main
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- _openmp_mutex=5.1=1_gnu
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- bzip2=1.0.8=h5eee18b_6
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- ca-certificates=2024.12.31=h06a4308_0
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- ld_impl_linux-64=2.40=h12ee557_0
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- libffi=3.4.4=h6a678d5_1
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- libgcc-ng=11.2.0=h1234567_1
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- libgomp=11.2.0=h1234567_1
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- libstdcxx-ng=11.2.0=h1234567_1
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- libuuid=1.41.5=h5eee18b_0
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- ncurses=6.4=h6a678d5_0
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- openssl=3.0.15=h5eee18b_0
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- pip=25.0=py310h06a4308_0
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- python=3.10.16=he870216_1
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- readline=8.2=h5eee18b_0
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- setuptools=75.8.0=py310h06a4308_0
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- sqlite=3.45.3=h5eee18b_0
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- tk=8.6.14=h39e8969_0
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- wheel=0.45.1=py310h06a4308_0
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- xz=5.4.6=h5eee18b_1
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- zlib=1.2.13=h5eee18b_1
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- pip:
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- accelerate==0.24.1
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- aiohappyeyeballs==2.4.4
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- aiohttp==3.11.11
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- aiosignal==1.3.2
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- annotated-types==0.7.0
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- anyio==4.8.0
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- argon2-cffi==23.1.0
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- argon2-cffi-bindings==21.2.0
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- arrow==1.3.0
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- asttokens==3.0.0
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- async-lru==2.0.4
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- async-timeout==5.0.1
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- attrs==25.1.0
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- babel==2.17.0
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- beautifulsoup4==4.13.1
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- biopython==1.81
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- bleach==6.2.0
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- certifi==2025.1.31
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- cffi==1.17.1
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- charset-normalizer==3.4.1
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- comm==0.2.2
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- contourpy==1.3.1
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- cycler==0.12.1
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- datasets==2.15.0
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- debugpy==1.8.12
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- decorator==5.1.1
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- deepspeed==0.12.3
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- defusedxml==0.7.1
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- dill==0.3.7
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- evaluate==0.4.1
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- exceptiongroup==1.2.2
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- executing==2.2.0
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- fastjsonschema==2.21.1
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- filelock==3.17.0
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- fonttools==4.55.8
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- fqdn==1.5.1
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- frozenlist==1.5.0
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- fsspec==2023.10.0
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- h11==0.14.0
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- hjson==3.1.0
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- httpcore==1.0.7
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- httpx==0.28.1
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- huggingface-hub==0.28.1
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- idna==3.10
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- ipykernel==6.29.5
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- ipython==8.32.0
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- ipywidgets==8.1.5
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- isoduration==20.11.0
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- jedi==0.19.2
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- jinja2==3.1.5
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- joblib==1.4.2
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- json5==0.10.0
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- jsonpointer==3.0.0
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- jsonschema==4.23.0
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- jsonschema-specifications==2024.10.1
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- jupyter==1.1.1
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- jupyter-client==8.6.3
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- jupyter-console==6.6.3
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- jupyter-core==5.7.2
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- jupyter-events==0.11.0
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- jupyter-lsp==2.2.5
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- jupyter-server==2.15.0
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- jupyter-server-terminals==0.5.3
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- jupyterlab==4.3.5
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- jupyterlab-pygments==0.3.0
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- jupyterlab-server==2.27.3
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- jupyterlab-widgets==3.0.13
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- kiwisolver==1.4.8
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- lab==8.3
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- markupsafe==3.0.2
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- matplotlib==3.8.2
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- matplotlib-inline==0.1.7
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- mistune==3.1.1
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- mpmath==1.3.0
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- multidict==6.1.0
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- multiprocess==0.70.15
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- nbclient==0.10.2
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- nbconvert==7.16.6
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- nbformat==5.10.4
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- nest-asyncio==1.6.0
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- networkx==3.4.2
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- ninja==1.11.1.3
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- notebook==7.3.2
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- notebook-shim==0.2.4
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- numpy==1.26.2
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- nvidia-cublas-cu12==12.1.3.1
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- nvidia-cuda-cupti-cu12==12.1.105
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- nvidia-cuda-nvrtc-cu12==12.1.105
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- nvidia-cuda-runtime-cu12==12.1.105
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- nvidia-cudnn-cu12==8.9.2.26
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- nvidia-cufft-cu12==11.0.2.54
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- nvidia-curand-cu12==10.3.2.106
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- nvidia-cusolver-cu12==11.4.5.107
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- nvidia-cusparse-cu12==12.1.0.106
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- nvidia-ml-py==12.570.86
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- nvidia-nccl-cu12==2.18.1
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- nvidia-nvjitlink-cu12==12.8.61
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- nvidia-nvtx-cu12==12.1.105
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- overrides==7.7.0
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- packaging==24.2
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- pandas==2.1.3
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- pandocfilters==1.5.1
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- parso==0.8.4
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- pexpect==4.9.0
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- pillow==11.1.0
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- platformdirs==4.3.6
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- prometheus-client==0.21.1
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- prompt-toolkit==3.0.50
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- propcache==0.2.1
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- psutil==6.1.1
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- ptyprocess==0.7.0
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- pure-eval==0.2.3
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- py-cpuinfo==9.0.0
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- pyarrow==19.0.0
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- pyarrow-hotfix==0.6
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- pycparser==2.22
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- pydantic==2.10.6
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- pydantic-core==2.27.2
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- pygments==2.19.1
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- pynvml==12.0.0
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- pyparsing==3.2.1
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- python-dateutil==2.9.0.post0
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- python-json-logger==3.2.1
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- pytz==2025.1
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- pyyaml==6.0.2
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- pyzmq==26.2.1
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- referencing==0.36.2
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- regex==2024.11.6
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- requests==2.32.3
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- responses==0.18.0
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- rfc3339-validator==0.1.4
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- rfc3986-validator==0.1.1
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- rpds-py==0.22.3
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- safetensors==0.5.2
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- scikit-learn==1.3.2
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- scipy==1.11.4
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- seaborn==0.13.0
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- send2trash==1.8.3
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- sentencepiece==0.1.99
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- simplejson==3.19.3
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- six==1.17.0
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- sniffio==1.3.1
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- soupsieve==2.6
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- stack-data==0.6.3
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- sympy==1.13.3
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- tabulate==0.9.0
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- terminado==0.18.1
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- threadpoolctl==3.5.0
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- tinycss2==1.4.0
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- tokenizers==0.15.2
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- tomli==2.2.1
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- torch==2.1.1
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- torchaudio==2.1.1
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- torchvision==0.16.1
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- tornado==6.4.2
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- tqdm==4.66.1
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- traitlets==5.14.3
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- transformers==4.35.2
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- triton==2.1.0
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- txt2tags==3.9
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- types-python-dateutil==2.9.0.20241206
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- typing-extensions==4.12.2
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- tzdata==2025.1
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- uri-template==1.3.0
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- urllib3==2.3.0
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- wcwidth==0.2.13
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- webcolors==24.11.1
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- webencodings==0.5.1
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- websocket-client==1.8.0
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- widgetsnbextension==4.0.13
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- xxhash==3.5.0
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- yarl==1.18.3
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prefix: /home/ubuntu/data/miniconda3/envs/llm_bioinfo

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