Imputation methods

[michbur]

1. min
2. mean
3. halfmin
4. median
5. zero
6. random
7. bpca
8. ppca
9. svd
10. nipals
11. nlpca
12. missmda_reg
13. missmda_em
14. amelia
15. missforest
16. mi
17. areg
18. qrilc
19. mle
20. twlsa
21. softimpute
22. irmi
23. pmm
24. midastouch
25. cart
26. rf
27. norm
28. norm.nob
29. norm.boot
30. norm.predict
31. lasso.norm
32. lasso.select.norm
33. PEMM https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4061266/
34. kNN-TN https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1547-6
35. GSimp https://github.com/WandeRum/GSimp

[michbur]

Won't be added:

• rMisbeta - requires two classes

[KrystynaGrzesiak]

sources and references:
https://docs.google.com/spreadsheets/d/1TSyhQYtzjgsQRPnBu9ss73wkdkW9Ht7ZAsoLp4YieaA/edit?usp=sharing

[jarochi]

spreadsheet:
https://docs.google.com/spreadsheets/d/1NhkV2ZlhDBAkQOpd3CCJbDoUQWf4WnlC9aiOLPcr4KU/edit?pli=1#gid=0
pubmed queries:
imputation missing metabolomics; metabolomics missing values; metabolomics missing; metabolomics imputation

[michbur]

Identify packages to following methods

method	doi	package/code	No code
nsKNN	10.1038/s41598-017-19120-0	NA	FALSE
random forest	10.1093/bioinformatics/btz488	NA	TRUE
KNN-TN	10.1093/bioinformatics/btz488	NA	TRUE
compound minimium	10.1093/bioinformatics/btz488	NA	TRUE
GSimp	10.1093/bioinformatics/btz488	NA	TRUE
KNN-TN	10.1186/s12859-019-3250-2	NA	TRUE
GSimp	10.1186/s12859-019-3250-2	NA	TRUE