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Add new ncbi translation code #307

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merged 4 commits into from
Jun 24, 2024
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camilogarciabotero
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Hi all,

I came across with a couple of papers in which the relevance of the 15th genetic code (Blepharisma Nuclear Code) for translation of phage genes for the human virome was highlighted (Peters et al., 2022; Cook et al., 2024).

So I wanted to added this genetic code here.

Ryan Cook, Andrea Telatin, George Bouras, Antonio Pedro Camargo, Martin Larralde, Robert A Edwards, Evelien M Adriaenssens, Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages, ISME Communications, 2024;, ycae079, https://doi.org/10.1093/ismeco/ycae079

Peters SL, Borges AL, Giannone RJ, Morowitz MJ, Banfield JF, Hettich RL. Experimental validation that human microbiome phages use alternative genetic coding. Nat Commun. 2022 Sep 29;13(1):5710. doi: 10.1038/s41467-022-32979-6. PMID: 36175428; PMCID: PMC9523058.

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@jakobnissen jakobnissen merged commit af67daf into BioJulia:master Jun 24, 2024
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@jakobnissen
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Thanks for the contribution! And sorry I was late in noticing this

@camilogarciabotero
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No worries, thanks for reviewing and merging it!

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