{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":327716604,"defaultBranch":"master","name":"glycowork","ownerLogin":"BojarLab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-01-07T20:22:02.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/77097047?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1719401384.0","currentOid":""},"activityList":{"items":[{"before":"ae58f1e3abd10b7bc8988e4867183c57db806666","after":"73a8852c87f81fbb143fd9c24c09d66268914688","ref":"refs/heads/dev","pushedAt":"2024-07-29T08:37:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"add get_class & refine extend_network","shortMessageHtmlLink":"add get_class & refine extend_network"}},{"before":"6ea54ea75548bafa8e681dca1a59f1876910a637","after":"ae58f1e3abd10b7bc8988e4867183c57db806666","ref":"refs/heads/dev","pushedAt":"2024-07-19T12:56:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"add optional adduct/tag to mass calculation","shortMessageHtmlLink":"add optional adduct/tag to mass calculation"}},{"before":"c0aca32379408412e7e7842d3cdd3d391ba29734","after":"6ea54ea75548bafa8e681dca1a59f1876910a637","ref":"refs/heads/dev","pushedAt":"2024-07-17T14:23:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"some network robustifications","shortMessageHtmlLink":"some network robustifications"}},{"before":"dadaf610e1d7b29b88ebae0639ff93ebee66ca1d","after":"c0aca32379408412e7e7842d3cdd3d391ba29734","ref":"refs/heads/dev","pushedAt":"2024-07-16T05:33:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"roll back graph_to_string change","shortMessageHtmlLink":"roll back graph_to_string change"}},{"before":"f725e404f1e74cb27d741262b3a556063e121c7e","after":"dadaf610e1d7b29b88ebae0639ff93ebee66ca1d","ref":"refs/heads/dev","pushedAt":"2024-07-15T13:00:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"minor optimizations","shortMessageHtmlLink":"minor optimizations"}},{"before":"7d4eb7f1406629cf75bd766c308e2c3b7b39cc61","after":"f725e404f1e74cb27d741262b3a556063e121c7e","ref":"refs/heads/dev","pushedAt":"2024-07-15T08:43:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"some more network optimizations","shortMessageHtmlLink":"some more network optimizations"}},{"before":"dffcb21197d0827378f9db332909f3b16a67a9c9","after":"7d4eb7f1406629cf75bd766c308e2c3b7b39cc61","ref":"refs/heads/dev","pushedAt":"2024-07-13T03:55:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"extend network in extend_network","shortMessageHtmlLink":"extend network in extend_network"}},{"before":"e8366b96c706b3122b9b10be8c81a01712803139","after":"dffcb21197d0827378f9db332909f3b16a67a9c9","ref":"refs/heads/dev","pushedAt":"2024-07-12T09:53:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"Optimize get_differential_biosynthesis","shortMessageHtmlLink":"Optimize get_differential_biosynthesis"}},{"before":"79db8317e9b0bf7c4ff98d8f9eb7c2c83a30b1ea","after":"e8366b96c706b3122b9b10be8c81a01712803139","ref":"refs/heads/dev","pushedAt":"2024-07-12T07:49:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"performance pass over biosynthetic networks","shortMessageHtmlLink":"performance pass over biosynthetic networks"}},{"before":"d25a8d1070ccee59aae0102b028e5ded14e436eb","after":"79db8317e9b0bf7c4ff98d8f9eb7c2c83a30b1ea","ref":"refs/heads/dev","pushedAt":"2024-07-11T08:08:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"fix node labels in data augmentation","shortMessageHtmlLink":"fix node labels in data augmentation"}},{"before":"b5e76d268671966f56475dd94ebf84e24f80473f","after":"d25a8d1070ccee59aae0102b028e5ded14e436eb","ref":"refs/heads/dev","pushedAt":"2024-07-11T07:46:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"Add de-wildcarding to data augmentation","shortMessageHtmlLink":"Add de-wildcarding to data augmentation"}},{"before":"58293201c9bedfa56f0672037db370af639f8555","after":"b5e76d268671966f56475dd94ebf84e24f80473f","ref":"refs/heads/dev","pushedAt":"2024-07-11T05:03:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"add glycan wildcarding as data augmentation option","shortMessageHtmlLink":"add glycan wildcarding as data augmentation option"}},{"before":"ce3028b6b178df38c54d530a3e0c5f8aaca5b20c","after":"58293201c9bedfa56f0672037db370af639f8555","ref":"refs/heads/dev","pushedAt":"2024-07-09T06:49:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"graph_to_string more robust & canonicalize_iupac to respect GlcOP-ol","shortMessageHtmlLink":"graph_to_string more robust & canonicalize_iupac to respect GlcOP-ol"}},{"before":"6affe23ca3ded04f494eed627c841efb6cc5d150","after":"ce3028b6b178df38c54d530a3e0c5f8aaca5b20c","ref":"refs/heads/dev","pushedAt":"2024-07-08T12:22:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"support multi-step extension in extend_network","shortMessageHtmlLink":"support multi-step extension in extend_network"}},{"before":"bfa969ea86d5b09181f626abf2c71489add7ae56","after":"6affe23ca3ded04f494eed627c841efb6cc5d150","ref":"refs/heads/dev","pushedAt":"2024-07-08T11:58:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"support floating post-biosynthetic modifications in some functions","shortMessageHtmlLink":"support floating post-biosynthetic modifications in some functions"}},{"before":"9624977025f2483f5867586f735c10f26751383d","after":"bfa969ea86d5b09181f626abf2c71489add7ae56","ref":"refs/heads/dev","pushedAt":"2024-07-08T09:37:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"filter chemical impossibilities in get_possible_topologies\n\n- also filter out PTMs in extend_networks (for now)","shortMessageHtmlLink":"filter chemical impossibilities in get_possible_topologies"}},{"before":"f2bb2e1c5f30b416920aa1a0d23180e3c9b59191","after":"9624977025f2483f5867586f735c10f26751383d","ref":"refs/heads/dev","pushedAt":"2024-07-08T09:16:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"start supporting network extension\n\n- get_possible_topologies now can filter by physiological extensions\n- added extend_glycans and extend_network to, in principle, extend biosynthetic networks based on observed reactions and physiological extensions","shortMessageHtmlLink":"start supporting network extension"}},{"before":"95aec82f8a63a533ba6bc2fc7e0ee50441379178","after":"f2bb2e1c5f30b416920aa1a0d23180e3c9b59191","ref":"refs/heads/dev","pushedAt":"2024-07-05T13:25:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"speed up dataset_to_graphs for duplicate glycans","shortMessageHtmlLink":"speed up dataset_to_graphs for duplicate glycans"}},{"before":"64ad05f43ee7b014252c4e55149f82608db69206","after":"95aec82f8a63a533ba6bc2fc7e0ee50441379178","ref":"refs/heads/dev","pushedAt":"2024-07-05T05:42:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"add differential expression tutorial to Examples tab in docs","shortMessageHtmlLink":"add differential expression tutorial to Examples tab in docs"}},{"before":"f6ff830725a5c04c7adcb0ae64567eb84f162afd","after":"64ad05f43ee7b014252c4e55149f82608db69206","ref":"refs/heads/dev","pushedAt":"2024-07-02T10:04:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"fixed feature_set warning","shortMessageHtmlLink":"fixed feature_set warning"}},{"before":"db6c19d12088e44a68df6c6335b10e6972ac2c91","after":"f6ff830725a5c04c7adcb0ae64567eb84f162afd","ref":"refs/heads/dev","pushedAt":"2024-07-02T09:04:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"better handle merging terminal1/terminal2 features","shortMessageHtmlLink":"better handle merging terminal1/terminal2 features"}},{"before":"db9e9f9735fa30abd0a981680af1bc401b3baf98","after":"db6c19d12088e44a68df6c6335b10e6972ac2c91","ref":"refs/heads/dev","pushedAt":"2024-06-30T06:17:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"support sulfated HexA in map_to_basic","shortMessageHtmlLink":"support sulfated HexA in map_to_basic"}},{"before":"3098e80f64588ad5dffb88d11dac14a969eba448","after":"db9e9f9735fa30abd0a981680af1bc401b3baf98","ref":"refs/heads/dev","pushedAt":"2024-06-28T11:30:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"refine logic of terminal feature selection","shortMessageHtmlLink":"refine logic of terminal feature selection"}},{"before":"21049e173c3f58171d98823c2eeb0572dfab61f3","after":"3098e80f64588ad5dffb88d11dac14a969eba448","ref":"refs/heads/dev","pushedAt":"2024-06-27T12:23:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"feature_set robustification & warning","shortMessageHtmlLink":"feature_set robustification & warning"}},{"before":"d7ebd4e7ed9be595e244f33e38f5e4f770596fac","after":"21049e173c3f58171d98823c2eeb0572dfab61f3","ref":"refs/heads/dev","pushedAt":"2024-06-27T11:58:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"support Terminal_ nomenclature in GlycoDraw and annotate_figure","shortMessageHtmlLink":"support Terminal_ nomenclature in GlycoDraw and annotate_figure"}},{"before":null,"after":"ab73b62d7d500d321592cca20cdf3b8507f60026","ref":"refs/heads/dev_dl","pushedAt":"2024-06-26T11:29:44.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Old-Shatterhand","name":"Roman Joeres","path":"/Old-Shatterhand","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/70888826?s=80&v=4"},"commit":{"message":"Make SweetNet resizable","shortMessageHtmlLink":"Make SweetNet resizable"}},{"before":"2a3de08629c2a53310def7bb6731db53ac04879d","after":"d7ebd4e7ed9be595e244f33e38f5e4f770596fac","ref":"refs/heads/dev","pushedAt":"2024-06-25T10:30:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"support capping side specification in outlier treatments","shortMessageHtmlLink":"support capping side specification in outlier treatments"}},{"before":"ac8c826dd4cf02eea2b794f111d29bb73f6ec8d0","after":"2a3de08629c2a53310def7bb6731db53ac04879d","ref":"refs/heads/dev","pushedAt":"2024-06-22T05:53:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"still record mean abundance and log2FC in variance filtering prison","shortMessageHtmlLink":"still record mean abundance and log2FC in variance filtering prison"}},{"before":"a6087f976576b2b1d66fd1afd68591da67c70274","after":"ac8c826dd4cf02eea2b794f111d29bb73f6ec8d0","ref":"refs/heads/dev","pushedAt":"2024-06-21T12:52:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"add accounting for technical variation via the monte_carlo keyword in glycoDE","shortMessageHtmlLink":"add accounting for technical variation via the monte_carlo keyword in…"}},{"before":"088a901bb6331045338cd8532a9899af1284d7b5","after":"a6087f976576b2b1d66fd1afd68591da67c70274","ref":"refs/heads/dev","pushedAt":"2024-06-20T06:50:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Bribak","name":"Daniel Bojar","path":"/Bribak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7893062?s=80&v=4"},"commit":{"message":"prevent things like GlcNAc6S transfer in construct_network\n\n(GlcNAc & 6S would be two separate transfers)","shortMessageHtmlLink":"prevent things like GlcNAc6S transfer in construct_network"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEi6geLQA","startCursor":null,"endCursor":null}},"title":"Activity · BojarLab/glycowork"}