You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
Just found a bug, where prediction from "Predict" menu does not work if the files paths are too long. Copying the files closer to root make it work again.
It raises an Exception:
[ERROR] Command errored: N2V predict java.lang.InternalError: Should not get here at sun.nio.fs.WindowsNativeDispatcher.GetFinalPathNameByHandle(Native Method) at sun.nio.fs.WindowsLinkSupport.getFinalPath(WindowsLinkSupport.java:77) at sun.nio.fs.WindowsLinkSupport.getRealPath(WindowsLinkSupport.java:242) at sun.nio.fs.WindowsPath.toRealPath(WindowsPath.java:836) at sun.nio.fs.WindowsPath.toRealPath(WindowsPath.java:44) at com.sun.nio.zipfs.ZipFileSystemProvider.removeFileSystem(ZipFileSystemProvider.java:322) at com.sun.nio.zipfs.ZipFileSystem.close(ZipFileSystem.java:313) at net.imagej.modelzoo.DefaultModelZooArchive.extract(DefaultModelZooArchive.java:181) at net.imagej.modelzoo.DefaultModelZooArchive.createModelInstance(DefaultModelZooArchive.java:111) at net.imagej.modelzoo.consumer.AbstractModelZooPrediction.loadModel(AbstractModelZooPrediction.java:156) at net.imagej.modelzoo.consumer.AbstractModelZooPrediction.run(AbstractModelZooPrediction.java:99) at net.imagej.modelzoo.consumer.command.AbstractSingleImagePredictionCommand.run(AbstractSingleImagePredictionCommand.java:101) at de.csbdresden.n2v.command.N2VPredictCommand.run(N2VPredictCommand.java:59) at org.scijava.command.CommandModule.run(CommandModule.java:196) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64) at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750)
And in the console:
`(Fiji Is Just) ImageJ 2.14.0/1.54j; Java 1.8.0_322 [64-bit]; Windows 10 10.0; 281MB of 12014MB (2%)
java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Module threw error
at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:308)
at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:166)
at ij.IJ.runPlugIn(IJ.java)
at ij.Executer.runCommand(Executer.java:152)
at ij.Executer.run(Executer.java:70)
at java.lang.Thread.run(Thread.java:750)
Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Module threw error
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:304)
... 5 more
Caused by: java.lang.RuntimeException: Module threw error
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:131)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
Caused by: java.lang.InternalError: Should not get here
at sun.nio.fs.WindowsNativeDispatcher.GetFinalPathNameByHandle(Native Method)
at sun.nio.fs.WindowsLinkSupport.getFinalPath(WindowsLinkSupport.java:77)
at sun.nio.fs.WindowsLinkSupport.getRealPath(WindowsLinkSupport.java:242)
at sun.nio.fs.WindowsPath.toRealPath(WindowsPath.java:836)
at sun.nio.fs.WindowsPath.toRealPath(WindowsPath.java:44)
at com.sun.nio.zipfs.ZipFileSystemProvider.removeFileSystem(ZipFileSystemProvider.java:322)
at com.sun.nio.zipfs.ZipFileSystem.close(ZipFileSystem.java:313)
at net.imagej.modelzoo.DefaultModelZooArchive.extract(DefaultModelZooArchive.java:181)
at net.imagej.modelzoo.DefaultModelZooArchive.createModelInstance(DefaultModelZooArchive.java:111)
at net.imagej.modelzoo.consumer.AbstractModelZooPrediction.loadModel(AbstractModelZooPrediction.java:156)
at net.imagej.modelzoo.consumer.AbstractModelZooPrediction.run(AbstractModelZooPrediction.java:99)
at net.imagej.modelzoo.consumer.command.AbstractSingleImagePredictionCommand.run(AbstractSingleImagePredictionCommand.java:101)
at de.csbdresden.n2v.command.N2VPredictCommand.run(N2VPredictCommand.java:59)
at org.scijava.command.CommandModule.run(CommandModule.java:196)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
... 6 more
`
Best,
The text was updated successfully, but these errors were encountered:
Hi,
Just found a bug, where prediction from "Predict" menu does not work if the files paths are too long. Copying the files closer to root make it work again.
It raises an Exception:
[ERROR] Command errored: N2V predict java.lang.InternalError: Should not get here at sun.nio.fs.WindowsNativeDispatcher.GetFinalPathNameByHandle(Native Method) at sun.nio.fs.WindowsLinkSupport.getFinalPath(WindowsLinkSupport.java:77) at sun.nio.fs.WindowsLinkSupport.getRealPath(WindowsLinkSupport.java:242) at sun.nio.fs.WindowsPath.toRealPath(WindowsPath.java:836) at sun.nio.fs.WindowsPath.toRealPath(WindowsPath.java:44) at com.sun.nio.zipfs.ZipFileSystemProvider.removeFileSystem(ZipFileSystemProvider.java:322) at com.sun.nio.zipfs.ZipFileSystem.close(ZipFileSystem.java:313) at net.imagej.modelzoo.DefaultModelZooArchive.extract(DefaultModelZooArchive.java:181) at net.imagej.modelzoo.DefaultModelZooArchive.createModelInstance(DefaultModelZooArchive.java:111) at net.imagej.modelzoo.consumer.AbstractModelZooPrediction.loadModel(AbstractModelZooPrediction.java:156) at net.imagej.modelzoo.consumer.AbstractModelZooPrediction.run(AbstractModelZooPrediction.java:99) at net.imagej.modelzoo.consumer.command.AbstractSingleImagePredictionCommand.run(AbstractSingleImagePredictionCommand.java:101) at de.csbdresden.n2v.command.N2VPredictCommand.run(N2VPredictCommand.java:59) at org.scijava.command.CommandModule.run(CommandModule.java:196) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64) at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:750)
And in the console:
`(Fiji Is Just) ImageJ 2.14.0/1.54j; Java 1.8.0_322 [64-bit]; Windows 10 10.0; 281MB of 12014MB (2%)
java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Module threw error
at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:308)
at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:166)
at ij.IJ.runPlugIn(IJ.java)
at ij.Executer.runCommand(Executer.java:152)
at ij.Executer.run(Executer.java:70)
at java.lang.Thread.run(Thread.java:750)
Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Module threw error
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:304)
... 5 more
Caused by: java.lang.RuntimeException: Module threw error
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:131)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more
Caused by: java.lang.InternalError: Should not get here
at sun.nio.fs.WindowsNativeDispatcher.GetFinalPathNameByHandle(Native Method)
at sun.nio.fs.WindowsLinkSupport.getFinalPath(WindowsLinkSupport.java:77)
at sun.nio.fs.WindowsLinkSupport.getRealPath(WindowsLinkSupport.java:242)
at sun.nio.fs.WindowsPath.toRealPath(WindowsPath.java:836)
at sun.nio.fs.WindowsPath.toRealPath(WindowsPath.java:44)
at com.sun.nio.zipfs.ZipFileSystemProvider.removeFileSystem(ZipFileSystemProvider.java:322)
at com.sun.nio.zipfs.ZipFileSystem.close(ZipFileSystem.java:313)
at net.imagej.modelzoo.DefaultModelZooArchive.extract(DefaultModelZooArchive.java:181)
at net.imagej.modelzoo.DefaultModelZooArchive.createModelInstance(DefaultModelZooArchive.java:111)
at net.imagej.modelzoo.consumer.AbstractModelZooPrediction.loadModel(AbstractModelZooPrediction.java:156)
at net.imagej.modelzoo.consumer.AbstractModelZooPrediction.run(AbstractModelZooPrediction.java:99)
at net.imagej.modelzoo.consumer.command.AbstractSingleImagePredictionCommand.run(AbstractSingleImagePredictionCommand.java:101)
at de.csbdresden.n2v.command.N2VPredictCommand.run(N2VPredictCommand.java:59)
at org.scijava.command.CommandModule.run(CommandModule.java:196)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
... 6 more
`
Best,
The text was updated successfully, but these errors were encountered: