{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":669145103,"defaultBranch":"main","name":"ionBench","ownerLogin":"CardiacModelling","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-07-21T13:00:21.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/44775763?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715174624.0","currentOid":""},"activityList":{"items":[{"before":"24aa2aec513330de6d41017c35ab50cdaa3c4b9c","after":"3fdd6c43bf4087f483fe79aa5a99b4f1ef982bf0","ref":"refs/heads/main","pushedAt":"2024-08-08T16:06:39.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"profile likelihood debug curves updated","shortMessageHtmlLink":"profile likelihood debug curves updated"}},{"before":"3574abe48b03e3f4a8051e82c3c67a98423577ac","after":"24aa2aec513330de6d41017c35ab50cdaa3c4b9c","ref":"refs/heads/main","pushedAt":"2024-08-02T15:27:13.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"removed spline from success rate samples\n\nspline had issues since it didnt remain inside (0,1)\nnow we use a linear interpolation of a digitized curve from the original work","shortMessageHtmlLink":"removed spline from success rate samples"}},{"before":"841c24e2b93dea1caf280022353ae15833698e68","after":"3574abe48b03e3f4a8051e82c3c67a98423577ac","ref":"refs/heads/main","pushedAt":"2024-07-23T11:37:18.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"tidy resultsFigures.py","shortMessageHtmlLink":"tidy resultsFigures.py"}},{"before":"a95ea9d2ed9c645d179a0967d2626c67d8f13b94","after":"841c24e2b93dea1caf280022353ae15833698e68","ref":"refs/heads/main","pushedAt":"2024-07-18T11:18:05.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"added further description on steady state to util readme","shortMessageHtmlLink":"added further description on steady state to util readme"}},{"before":"f56a8bd052b06d84863f876ea93567f5f0294b2c","after":"a95ea9d2ed9c645d179a0967d2626c67d8f13b94","ref":"refs/heads/main","pushedAt":"2024-07-16T13:39:12.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"added debug profile likelihood plots","shortMessageHtmlLink":"added debug profile likelihood plots"}},{"before":"09ed9f3c04cf27e0567f90364a0118953fb1f6df","after":"f56a8bd052b06d84863f876ea93567f5f0294b2c","ref":"refs/heads/main","pushedAt":"2024-07-16T10:49:16.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"added scripts readme","shortMessageHtmlLink":"added scripts readme"}},{"before":"c2b582488aecae0f2e51ad15b61ba9a0461764ae","after":"09ed9f3c04cf27e0567f90364a0118953fb1f6df","ref":"refs/heads/main","pushedAt":"2024-07-12T09:59:18.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"added uncertainty readme","shortMessageHtmlLink":"added uncertainty readme"}},{"before":"b4d4fcb5a55ba125f65caea72a59e9e34841a8d9","after":"c2b582488aecae0f2e51ad15b61ba9a0461764ae","ref":"refs/heads/main","pushedAt":"2024-07-11T10:52:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"changed name of Davies2011 to 2012","shortMessageHtmlLink":"changed name of Davies2011 to 2012"}},{"before":"3e7fb31191710332617b2f03ecb66a6092fef0b5","after":"b4d4fcb5a55ba125f65caea72a59e9e34841a8d9","ref":"refs/heads/main","pushedAt":"2024-07-10T10:04:25.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"fixes for profile likelihood with other optimisers\n\ncmaes requires some more settings in the profile manager from the benchmarker to work","shortMessageHtmlLink":"fixes for profile likelihood with other optimisers"}},{"before":"8399162033a576736eac6bd7d1c11b41d5b2b1e9","after":"3e7fb31191710332617b2f03ecb66a6092fef0b5","ref":"refs/heads/main","pushedAt":"2024-07-09T14:39:52.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"improved readability of some profile likelihoods\n\nsome plots have the y axis limits rounded to powers of 10","shortMessageHtmlLink":"improved readability of some profile likelihoods"}},{"before":"3e1f1dbffadc981d8b28b43d1377f62c7b90d5d1","after":"8399162033a576736eac6bd7d1c11b41d5b2b1e9","ref":"refs/heads/main","pushedAt":"2024-07-08T09:03:32.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"created optimiser readme","shortMessageHtmlLink":"created optimiser readme"}},{"before":"adc1a945aa83b34a7b617bdb72352abc825ecb2c","after":"3e1f1dbffadc981d8b28b43d1377f62c7b90d5d1","ref":"refs/heads/main","pushedAt":"2024-07-05T16:53:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"created modifications readme","shortMessageHtmlLink":"created modifications readme"}},{"before":"402dbdf582e2f2ad62d50d14e74843f3edff912a","after":"adc1a945aa83b34a7b617bdb72352abc825ecb2c","ref":"refs/heads/main","pushedAt":"2024-07-05T14:48:18.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"added readme for data directory","shortMessageHtmlLink":"added readme for data directory"}},{"before":"46f5fccd148ad72dc7d6b5e658af52466aa50014","after":"402dbdf582e2f2ad62d50d14e74843f3edff912a","ref":"refs/heads/main","pushedAt":"2024-07-05T08:49:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"changed profile likelihood optimiser\n\nchanged from lm (used to work well on some problems) to trr (seems to be the best)\nalso made it optional input, cmaes might be a good choice for its high success rate","shortMessageHtmlLink":"changed profile likelihood optimiser"}},{"before":"a21c5978850583d6457886020c0eaa3bbc1fdddf","after":"46f5fccd148ad72dc7d6b5e658af52466aa50014","ref":"refs/heads/main","pushedAt":"2024-07-05T08:37:08.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"print average cost and grad times in review","shortMessageHtmlLink":"print average cost and grad times in review"}},{"before":"4ee237518d82669a87b2d54993b81d4bb470e6ff","after":"a21c5978850583d6457886020c0eaa3bbc1fdddf","ref":"refs/heads/main","pushedAt":"2024-06-14T11:04:18.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"removed some exceptions from coverage","shortMessageHtmlLink":"removed some exceptions from coverage"}},{"before":"cf80ccf6156d9d1292632dc9169685cb479bf287","after":"4ee237518d82669a87b2d54993b81d4bb470e6ff","ref":"refs/heads/main","pushedAt":"2024-06-13T16:27:27.000Z","pushType":"push","commitsCount":20,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"bug fixing and improved tests for profile likelihood","shortMessageHtmlLink":"bug fixing and improved tests for profile likelihood"}},{"before":"25e2f9ee24b4bae5d6a9546c0482e807627d9f5f","after":"cf80ccf6156d9d1292632dc9169685cb479bf287","ref":"refs/heads/main","pushedAt":"2024-06-05T09:11:01.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"removed \"run optimiser as script\" feature\n\ninterferes with test coverage","shortMessageHtmlLink":"removed \"run optimiser as script\" feature"}},{"before":"e9479abae82a5b6891037da831dd415a82bab0b8","after":"25e2f9ee24b4bae5d6a9546c0482e807627d9f5f","ref":"refs/heads/main","pushedAt":"2024-05-17T06:46:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"added missing ionbench import to utils/cache","shortMessageHtmlLink":"added missing ionbench import to utils/cache"}},{"before":"6fbd4c7ff53828994ef55ef6dd405eade145d0a1","after":"e9479abae82a5b6891037da831dd415a82bab0b8","ref":"refs/heads/main","pushedAt":"2024-05-17T06:25:03.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"caching can now be disabled globally","shortMessageHtmlLink":"caching can now be disabled globally"}},{"before":"478f82ade501b83ff58495d0aa1c0db125da4696","after":"6fbd4c7ff53828994ef55ef6dd405eade145d0a1","ref":"refs/heads/main","pushedAt":"2024-05-16T15:31:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"changed moreno data plot to red\n\nto match data (current) for other problems","shortMessageHtmlLink":"changed moreno data plot to red"}},{"before":"ed8b528a558e8b5eae3e41a2d7a1a3d980873d1b","after":"478f82ade501b83ff58495d0aa1c0db125da4696","ref":"refs/heads/main","pushedAt":"2024-05-16T08:24:14.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"updated results figure to use FEs not time\n\nremoved failed plot","shortMessageHtmlLink":"updated results figure to use FEs not time"}},{"before":"dbb48e0742490816297f1edbb3d3d23dcce9165d","after":"ed8b528a558e8b5eae3e41a2d7a1a3d980873d1b","ref":"refs/heads/main","pushedAt":"2024-05-08T13:06:13.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"v0.5.0 update","shortMessageHtmlLink":"v0.5.0 update"}},{"before":"ca2a796cee04ff488ce4af861700a0ce0942138f","after":"dbb48e0742490816297f1edbb3d3d23dcce9165d","ref":"refs/heads/main","pushedAt":"2024-05-08T12:54:54.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"updated tests for changes to staircase bounds","shortMessageHtmlLink":"updated tests for changes to staircase bounds"}},{"before":"ab01342d030996634028b0b0c46c1e15cb533193","after":"ca2a796cee04ff488ce4af861700a0ce0942138f","ref":"refs/heads/main","pushedAt":"2024-05-01T15:21:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"reducing memory usage from caching\n\nmemory issues in long runs. This might fix it.\nWe can now clear the caches to all cached functions. Now used in multistart\nNote that this just clears the old data of the previous run from memory, it has never been accessible across runs since a new cached function is generated every optimisation","shortMessageHtmlLink":"reducing memory usage from caching"}},{"before":"fde80f6e7cc6d4a6b7a1761aa8b6f3dcf78a104c","after":"ab01342d030996634028b0b0c46c1e15cb533193","ref":"refs/heads/main","pushedAt":"2024-05-01T14:35:33.000Z","pushType":"push","commitsCount":15,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"added the rprop implementation from pints","shortMessageHtmlLink":"added the rprop implementation from pints"}},{"before":"fe2fa9fdb303095bd4629396ad8be369abbaa00f","after":"fde80f6e7cc6d4a6b7a1761aa8b6f3dcf78a104c","ref":"refs/heads/main","pushedAt":"2024-04-11T17:22:45.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"v0.4.3 update","shortMessageHtmlLink":"v0.4.3 update"}},{"before":"d13c2576fb84963152875b559ecbd2d9ab29caa3","after":"fe2fa9fdb303095bd4629396ad8be369abbaa00f","ref":"refs/heads/main","pushedAt":"2024-04-11T16:08:21.000Z","pushType":"push","commitsCount":17,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"Update reviewOptimiserRuns.py\n\nrenamed files\nnow loads all tracker files from the same directory\nfixed bug in order or tier and success rate for LaTeX tables","shortMessageHtmlLink":"Update reviewOptimiserRuns.py"}},{"before":"69402dd959a4d6ad0bcb7e37c3079dca458de6f5","after":"d13c2576fb84963152875b559ecbd2d9ab29caa3","ref":"refs/heads/main","pushedAt":"2024-04-05T15:49:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"v0.4.2 update\n\nsome more bug fixing to gather v0.4 results","shortMessageHtmlLink":"v0.4.2 update"}},{"before":"076b336f5cf9cb395b30939debbbadc3eb8db4ed","after":"69402dd959a4d6ad0bcb7e37c3079dca458de6f5","ref":"refs/heads/main","pushedAt":"2024-04-05T15:45:47.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57675972?s=80&v=4"},"commit":{"message":"updated runOptimisers\n\nsimplified the outputs and removed some unnecessary variables","shortMessageHtmlLink":"updated runOptimisers"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAElXKuYgA","startCursor":null,"endCursor":null}},"title":"Activity ยท CardiacModelling/ionBench"}