DESCRIPTION

Package: TrialEmulation
Title: Causal Analysis of Observational Time-to-Event Data
Version: 0.0.4.3
Authors@R: c(
    person("Isaac", "Gravestock", , "isaac.gravestock@roche.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0283-2065")),
    person("Li", "Su", , "li.su@mrc-bsu.cam.ac.uk", role = "aut"),
    person("Roonak", "Rezvani", , "roonak.r74@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0001-5580-5058", "Original package author")),
    person("Julia", "Moesch", , "julia.moesch@roche.com", role = "aut"),
    person("Medical Research Council (MRC)", role = "fnd"),
    person("F. Hoffmann-La Roche AG", role = c("cph", "fnd"))
  )
Description: Implements target trial emulation methods to apply randomized
    clinical trial design and analysis in an observational setting. Using
    marginal structural models, it can estimate intention-to-treat and
    per-protocol effects in emulated trials using electronic health
    records. A description and application of the method can be found in
    Danaei et al (2013) <doi:10.1177/0962280211403603>.
License: Apache License (>= 2)
URL: https://causal-lda.github.io/TrialEmulation/,
    https://github.com/Causal-LDA/TrialEmulation
BugReports: https://github.com/Causal-LDA/TrialEmulation/issues
Depends: 
    R (>= 4.0.0)
Imports: 
    broom (>= 0.7.10),
    checkmate,
    data.table (>= 1.9.8),
    DBI,
    duckdb,
    formula.tools,
    lifecycle,
    lmtest,
    methods,
    mvtnorm,
    parglm,
    Rcpp,
    sandwich
Suggests: 
    knitr,
    parsnip,
    rmarkdown,
    rpart,
    testthat (>= 3.0.0),
    withr
LinkingTo: 
    Rcpp
VignetteBuilder: 
    knitr
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
LazyData: true
LazyDataCompression: xz
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2.9000
Collate: 
    'RcppExports.R'
    'calculate_weights.R'
    'data.R'
    'data_extension.R'
    'data_manipulation.R'
    'data_preparation.R'
    'data_simulation.R'
    'data_utils.R'
    'expand_trials.R'
    'generics.R'
    'initiators.R'
    'lr_utils.R'
    'te_model_fitter.R'
    'te_outcome_model.R'
    'te_datastore.R'
    'te_weights.R'
    'te_data.R'
    'te_expansion.R'
    'trial_sequence.R'
    'modelling.R'
    'package.R'
    'predict.R'
    'robust.R'
    'sampling.R'
    'te_datastore_csv.R'
    'te_datastore_duckdb.R'
    'te_parsnip.R'
    'te_stats_glm_logit.R'
    'utils.R'
    'weighting.R'