diff --git a/Gemfile b/Gemfile
index c6b9796..3f5b3c9 100644
--- a/Gemfile
+++ b/Gemfile
@@ -7,17 +7,18 @@ source "https://rubygems.org"
 #
 # This will help ensure the proper Jekyll version is running.
 # Happy Jekylling!
-#gem "jekyll", "~> 4.3.2"
+gem "jekyll", "~> 4.3.2"
 # This is the default theme for new Jekyll sites. You may change this to anything you like.
 #gem "minima", "~> 2.5"
 # If you want to use GitHub Pages, remove the "gem "jekyll"" above and
 # uncomment the line below. To upgrade, run `bundle update github-pages`.
 # gem "github-pages", group: :jekyll_plugins
-gem "github-pages", "~> 228", group: :jekyll_plugins
+# gem "github-pages", "~> 228", group: :jekyll_plugins
 # If you have any plugins, put them here!
-group :jekyll_plugins do
-  gem "jekyll-feed", "~> 0.12"
-end
+# group :jekyll_plugins do
+  # gem "jekyll-feed", "~> 0.12"
+gem 'jekyll-redirect-from'
+# end
 
 # Windows and JRuby does not include zoneinfo files, so bundle the tzinfo-data gem
 # and associated library.
@@ -34,5 +35,4 @@ gem "wdm", "~> 0.1.1", :platforms => [:mingw, :x64_mingw, :mswin]
 gem "http_parser.rb", "~> 0.6.0", :platforms => [:jruby]
 
 gem "webrick", "~> 1.8"
-gem "just-the-docs"
-gem 'jekyll-redirect-from'
\ No newline at end of file
+gem "just-the-docs"
\ No newline at end of file
diff --git a/Gemfile.lock b/Gemfile.lock
index 57550a3..dcf5b88 100644
--- a/Gemfile.lock
+++ b/Gemfile.lock
@@ -1,219 +1,54 @@
 GEM
   remote: https://rubygems.org/
   specs:
-    activesupport (7.1.1)
-      base64
-      bigdecimal
-      concurrent-ruby (~> 1.0, >= 1.0.2)
-      connection_pool (>= 2.2.5)
-      drb
-      i18n (>= 1.6, < 2)
-      minitest (>= 5.1)
-      mutex_m
-      tzinfo (~> 2.0)
     addressable (2.8.5)
       public_suffix (>= 2.0.2, < 6.0)
-    base64 (0.1.1)
-    bigdecimal (3.1.4)
-    coffee-script (2.4.1)
-      coffee-script-source
-      execjs
-    coffee-script-source (1.11.1)
     colorator (1.1.0)
-    commonmarker (0.23.10)
     concurrent-ruby (1.2.2)
-    connection_pool (2.4.1)
-    dnsruby (1.70.0)
-      simpleidn (~> 0.2.1)
-    drb (2.1.1)
-      ruby2_keywords
     em-websocket (0.5.3)
       eventmachine (>= 0.12.9)
       http_parser.rb (~> 0)
-    ethon (0.16.0)
-      ffi (>= 1.15.0)
     eventmachine (1.2.7)
-    execjs (2.9.1)
-    faraday (2.7.11)
-      base64
-      faraday-net_http (>= 2.0, < 3.1)
-      ruby2_keywords (>= 0.0.4)
-    faraday-net_http (3.0.2)
     ffi (1.16.3)
     ffi (1.16.3-x64-mingw-ucrt)
     forwardable-extended (2.6.0)
-    gemoji (3.0.1)
-    github-pages (228)
-      github-pages-health-check (= 1.17.9)
-      jekyll (= 3.9.3)
-      jekyll-avatar (= 0.7.0)
-      jekyll-coffeescript (= 1.1.1)
-      jekyll-commonmark-ghpages (= 0.4.0)
-      jekyll-default-layout (= 0.1.4)
-      jekyll-feed (= 0.15.1)
-      jekyll-gist (= 1.5.0)
-      jekyll-github-metadata (= 2.13.0)
-      jekyll-include-cache (= 0.2.1)
-      jekyll-mentions (= 1.6.0)
-      jekyll-optional-front-matter (= 0.3.2)
-      jekyll-paginate (= 1.1.0)
-      jekyll-readme-index (= 0.3.0)
-      jekyll-redirect-from (= 0.16.0)
-      jekyll-relative-links (= 0.6.1)
-      jekyll-remote-theme (= 0.4.3)
-      jekyll-sass-converter (= 1.5.2)
-      jekyll-seo-tag (= 2.8.0)
-      jekyll-sitemap (= 1.4.0)
-      jekyll-swiss (= 1.0.0)
-      jekyll-theme-architect (= 0.2.0)
-      jekyll-theme-cayman (= 0.2.0)
-      jekyll-theme-dinky (= 0.2.0)
-      jekyll-theme-hacker (= 0.2.0)
-      jekyll-theme-leap-day (= 0.2.0)
-      jekyll-theme-merlot (= 0.2.0)
-      jekyll-theme-midnight (= 0.2.0)
-      jekyll-theme-minimal (= 0.2.0)
-      jekyll-theme-modernist (= 0.2.0)
-      jekyll-theme-primer (= 0.6.0)
-      jekyll-theme-slate (= 0.2.0)
-      jekyll-theme-tactile (= 0.2.0)
-      jekyll-theme-time-machine (= 0.2.0)
-      jekyll-titles-from-headings (= 0.5.3)
-      jemoji (= 0.12.0)
-      kramdown (= 2.3.2)
-      kramdown-parser-gfm (= 1.1.0)
-      liquid (= 4.0.4)
-      mercenary (~> 0.3)
-      minima (= 2.5.1)
-      nokogiri (>= 1.13.6, < 2.0)
-      rouge (= 3.26.0)
-      terminal-table (~> 1.4)
-    github-pages-health-check (1.17.9)
-      addressable (~> 2.3)
-      dnsruby (~> 1.60)
-      octokit (~> 4.0)
-      public_suffix (>= 3.0, < 5.0)
-      typhoeus (~> 1.3)
-    html-pipeline (2.14.3)
-      activesupport (>= 2)
-      nokogiri (>= 1.4)
+    google-protobuf (3.25.0-x64-mingw-ucrt)
+    google-protobuf (3.25.0-x86_64-linux)
     http_parser.rb (0.8.0)
     i18n (1.14.1)
       concurrent-ruby (~> 1.0)
-    jekyll (3.9.3)
+    jekyll (4.3.2)
       addressable (~> 2.4)
       colorator (~> 1.0)
       em-websocket (~> 0.5)
-      i18n (>= 0.7, < 2)
-      jekyll-sass-converter (~> 1.0)
+      i18n (~> 1.0)
+      jekyll-sass-converter (>= 2.0, < 4.0)
       jekyll-watch (~> 2.0)
-      kramdown (>= 1.17, < 3)
+      kramdown (~> 2.3, >= 2.3.1)
+      kramdown-parser-gfm (~> 1.0)
       liquid (~> 4.0)
-      mercenary (~> 0.3.3)
+      mercenary (>= 0.3.6, < 0.5)
       pathutil (~> 0.9)
-      rouge (>= 1.7, < 4)
+      rouge (>= 3.0, < 5.0)
       safe_yaml (~> 1.0)
-    jekyll-avatar (0.7.0)
-      jekyll (>= 3.0, < 5.0)
-    jekyll-coffeescript (1.1.1)
-      coffee-script (~> 2.2)
-      coffee-script-source (~> 1.11.1)
-    jekyll-commonmark (1.4.0)
-      commonmarker (~> 0.22)
-    jekyll-commonmark-ghpages (0.4.0)
-      commonmarker (~> 0.23.7)
-      jekyll (~> 3.9.0)
-      jekyll-commonmark (~> 1.4.0)
-      rouge (>= 2.0, < 5.0)
-    jekyll-default-layout (0.1.4)
-      jekyll (~> 3.0)
-    jekyll-feed (0.15.1)
-      jekyll (>= 3.7, < 5.0)
-    jekyll-gist (1.5.0)
-      octokit (~> 4.2)
-    jekyll-github-metadata (2.13.0)
-      jekyll (>= 3.4, < 5.0)
-      octokit (~> 4.0, != 4.4.0)
+      terminal-table (>= 1.8, < 4.0)
+      webrick (~> 1.7)
     jekyll-include-cache (0.2.1)
       jekyll (>= 3.7, < 5.0)
-    jekyll-mentions (1.6.0)
-      html-pipeline (~> 2.3)
-      jekyll (>= 3.7, < 5.0)
-    jekyll-optional-front-matter (0.3.2)
-      jekyll (>= 3.0, < 5.0)
-    jekyll-paginate (1.1.0)
-    jekyll-readme-index (0.3.0)
-      jekyll (>= 3.0, < 5.0)
     jekyll-redirect-from (0.16.0)
       jekyll (>= 3.3, < 5.0)
-    jekyll-relative-links (0.6.1)
-      jekyll (>= 3.3, < 5.0)
-    jekyll-remote-theme (0.4.3)
-      addressable (~> 2.0)
-      jekyll (>= 3.5, < 5.0)
-      jekyll-sass-converter (>= 1.0, <= 3.0.0, != 2.0.0)
-      rubyzip (>= 1.3.0, < 3.0)
-    jekyll-sass-converter (1.5.2)
-      sass (~> 3.4)
+    jekyll-sass-converter (3.0.0)
+      sass-embedded (~> 1.54)
     jekyll-seo-tag (2.8.0)
       jekyll (>= 3.8, < 5.0)
-    jekyll-sitemap (1.4.0)
-      jekyll (>= 3.7, < 5.0)
-    jekyll-swiss (1.0.0)
-    jekyll-theme-architect (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-cayman (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-dinky (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-hacker (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-leap-day (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-merlot (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-midnight (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-minimal (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-modernist (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-primer (0.6.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-github-metadata (~> 2.9)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-slate (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-tactile (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-theme-time-machine (0.2.0)
-      jekyll (> 3.5, < 5.0)
-      jekyll-seo-tag (~> 2.0)
-    jekyll-titles-from-headings (0.5.3)
-      jekyll (>= 3.3, < 5.0)
     jekyll-watch (2.2.1)
       listen (~> 3.0)
-    jemoji (0.12.0)
-      gemoji (~> 3.0)
-      html-pipeline (~> 2.2)
-      jekyll (>= 3.0, < 5.0)
     just-the-docs (0.7.0)
       jekyll (>= 3.8.5)
       jekyll-include-cache
       jekyll-seo-tag (>= 2.0)
       rake (>= 12.3.1)
-    kramdown (2.3.2)
+    kramdown (2.4.0)
       rexml
     kramdown-parser-gfm (1.1.0)
       kramdown (~> 2.0)
@@ -221,55 +56,28 @@ GEM
     listen (3.8.0)
       rb-fsevent (~> 0.10, >= 0.10.3)
       rb-inotify (~> 0.9, >= 0.9.10)
-    mercenary (0.3.6)
-    minima (2.5.1)
-      jekyll (>= 3.5, < 5.0)
-      jekyll-feed (~> 0.9)
-      jekyll-seo-tag (~> 2.1)
-    minitest (5.20.0)
-    mutex_m (0.1.2)
-    nokogiri (1.15.4-x64-mingw-ucrt)
-      racc (~> 1.4)
-    nokogiri (1.15.4-x86_64-linux)
-      racc (~> 1.4)
-    octokit (4.25.1)
-      faraday (>= 1, < 3)
-      sawyer (~> 0.9)
+    mercenary (0.4.0)
     pathutil (0.16.2)
       forwardable-extended (~> 2.6)
-    public_suffix (4.0.7)
-    racc (1.7.2)
+    public_suffix (5.0.3)
     rake (13.1.0)
     rb-fsevent (0.11.2)
     rb-inotify (0.10.1)
       ffi (~> 1.0)
     rexml (3.2.6)
-    rouge (3.26.0)
-    ruby2_keywords (0.0.5)
-    rubyzip (2.3.2)
+    rouge (4.2.0)
     safe_yaml (1.0.5)
-    sass (3.7.4)
-      sass-listen (~> 4.0.0)
-    sass-listen (4.0.0)
-      rb-fsevent (~> 0.9, >= 0.9.4)
-      rb-inotify (~> 0.9, >= 0.9.7)
-    sawyer (0.9.2)
-      addressable (>= 2.3.5)
-      faraday (>= 0.17.3, < 3)
-    simpleidn (0.2.1)
-      unf (~> 0.1.4)
-    terminal-table (1.8.0)
-      unicode-display_width (~> 1.1, >= 1.1.1)
-    typhoeus (1.4.0)
-      ethon (>= 0.9.0)
+    sass-embedded (1.69.5-x64-mingw-ucrt)
+      google-protobuf (~> 3.23)
+    sass-embedded (1.69.5-x86_64-linux-gnu)
+      google-protobuf (~> 3.23)
+    terminal-table (3.0.2)
+      unicode-display_width (>= 1.1.1, < 3)
     tzinfo (2.0.6)
       concurrent-ruby (~> 1.0)
     tzinfo-data (1.2023.3)
       tzinfo (>= 1.0.0)
-    unf (0.1.4)
-      unf_ext
-    unf_ext (0.0.8.2)
-    unicode-display_width (1.8.0)
+    unicode-display_width (2.5.0)
     wdm (0.1.1)
     webrick (1.8.1)
 
@@ -278,9 +86,8 @@ PLATFORMS
   x86_64-linux
 
 DEPENDENCIES
-  github-pages (~> 228)
   http_parser.rb (~> 0.6.0)
-  jekyll-feed (~> 0.12)
+  jekyll (~> 4.3.2)
   jekyll-redirect-from
   just-the-docs
   tzinfo (>= 1, < 3)
diff --git a/_config.yml b/_config.yml
index ed1023e..127aa24 100644
--- a/_config.yml
+++ b/_config.yml
@@ -1,17 +1,3 @@
-# Welcome to Jekyll!
-#
-# This config file is meant for settings that affect your whole blog, values
-# which you are expected to set up once and rarely edit after that. If you find
-# yourself editing this file very often, consider using Jekyll's data files
-# feature for the data you need to update frequently.
-#
-# For technical reasons, this file is *NOT* reloaded automatically when you use
-# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
-#
-# If you need help with YAML syntax, here are some quick references for you:
-# https://learn-the-web.algonquindesign.ca/topics/markdown-yaml-cheat-sheet/#yaml
-# https://learnxinyminutes.com/docs/yaml/
-#
 # Site settings
 # These are used to personalize your new site. If you look in the HTML files,
 # you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
@@ -31,7 +17,6 @@ url: "http://chrastillab.github.io/" # the base hostname & protocol for your sit
 # Build settings
 theme: just-the-docs
 plugins:
-  - jekyll-feed
   - jekyll-redirect-from
 
 logo: "/assets/images/logo.png"
@@ -40,40 +25,48 @@ mermaid:
   version: "9.1.3"
 
 aux_links:
-  "Chrastil Lab Github":
+  "Chrastil Lab Repos":
     - "//github.com/chrastillab"
-  "Spatial Neuroscience Github":
+  "Spatial Neuroscience Repos":
     - "//github.com/chrastillab"
 
 aux_links_new_tab: true
 
+# Editing Components provides links to the github editing page
+gh_edit_link: true
+gh_edit_link_text: "Edit this page on GitHub."
+gh_edit_repository: "https://github.com/chrastillab/chrastillab.github.io" # the github URL for your repo
+gh_edit_branch: "gh-pages" # the branch that your docs is served from
+# gh_edit_source: docs # the source that your files originate from
+gh_edit_view_mode: "tree" # "tree" or "edit" if you want the user to jump into the editor immediately
+
+# Collection Settings
+
 collections:
+  coding:
+    permalink: "/:collection/:path/"
+    output: true
+  server_management:
+    permalink: "/:collection/:path/"
+    output: true
   misc:
     permalink: "/:collection/:path/"
     output: true
 
+
 just_the_docs:
   collections:
+    server_management:
+      name: "Server Management"
     misc:
-      name: Miscellaneous
+      name: "Miscellaneous"
 
+# Enabling line number for code
+compress_html:
+  ignore:
+    envs: all  
 
-# Exclude from processing.
-# The following items will not be processed, by default.
-# Any item listed under the `exclude:` key here will be automatically added to
-# the internal "default list".
-#
-# Excluded items can be processed by explicitly listing the directories or
-# their entries' file path in the `include:` list.
-#
-# exclude:
-#   - .sass-cache/
-#   - .jekyll-cache/
-#   - gemfiles/
-#   - Gemfile
-#   - Gemfile.lock
-#   - node_modules/
-#   - vendor/bundle/
-#   - vendor/cache/
-#   - vendor/gems/
-#   - vendor/ruby/
+kramdown:
+  syntax_highlighter_opts:
+    block:
+      line_numbers: true
\ No newline at end of file
diff --git a/server_management/index.md b/_server_management/index.md
similarity index 100%
rename from server_management/index.md
rename to _server_management/index.md
diff --git a/server_management/user_management/adding-ssh-key.md b/_server_management/user_management/adding-ssh-key.md
similarity index 90%
rename from server_management/user_management/adding-ssh-key.md
rename to _server_management/user_management/adding-ssh-key.md
index 3ef8e07..30716e8 100644
--- a/server_management/user_management/adding-ssh-key.md
+++ b/_server_management/user_management/adding-ssh-key.md
@@ -9,3 +9,6 @@ grand_parent: Server Management
 # Tired of typing password every time you login onto Hopper?
 # Use SSH Keys!
 
+
+
+# TO BE FILLED HERE
\ No newline at end of file
diff --git a/server_management/user_management/index.md b/_server_management/user_management/index.md
similarity index 100%
rename from server_management/user_management/index.md
rename to _server_management/user_management/index.md