EdgeMap FacePair out of range (-1) error with GenerateConnectivityFile, only installed with conda

[stella-bourdin]

Hi,

I encountered a problem that I was able to solve in the end but thought might be of interest rising:
I had first installed TempestExtremes on a new machine using conda.
I wanted to generate the connectivity file from the a SCRIP file, and here was the output:

bash-4.4$ GenerateConnectivityFile --in_mesh scrip.nc --out_connect out.txt
Arguments:
  --in_mesh <string> ["scrip.nc"]
  --in_concave <bool> [false]
  --out_type <string> ["FV"] [FV|CGLL|DGLL]
  --out_np <integer> [4]
  --out_connect <string> ["out.txt"]
------------------------------------------------------------
Loading mesh
..SCRIP Format File detected
..13107188 duplicate nodes detected
..Mesh size: Nodes [2621452] Elements [5242880]
..Done
Calculating connectivity information
..Mesh size: Edges [7864332]
..Done
Converting mesh to connectivity format
..EXCEPTION (/home/conda/feedstock_root/build_artifacts/tempest-extremes_1643338652905/work/src/base/SimpleGrid.cpp, Line 794) EdgeMap FacePair out of range (-1)

In the meantime, I had managed to install and compile the package via make, and when using this version, the exact same command line worked!

> ./tempestextremes/bin/GenerateConnectivityFile --in_mesh scrip.nc --out_connect connect.txt             
Arguments:
  --in_mesh <string> ["scrip.nc"]
  --in_concave <bool> [false]
  --out_type <string> ["FV"] [FV|CGLL|DGLL]
  --out_np <integer> [4]
  --out_connect <string> ["connect.txt"]
------------------------------------------------------------
Loading mesh
..SCRIP Format File detected
..13107188 duplicate nodes detected
..Mesh size: Nodes [2621452] Elements [5242880]
..Done
Calculating connectivity information
..WARNING: 812 small elements found
..Mesh size: Edges [7864332]
..Done
Converting mesh to connectivity format
..One-sided edges: 24
..Total calculated area: 6.138748655767176e-01 sr
..Done
Writing connectivity file.. Done
------------------------------------------------------------

Regards,
Stella

[paullric]

Thanks for pointing this out. I think it’s about time I put out a new code release so the Conda repo can be updated. This issue was fixed a couple weeks back on Git.

…

On Wed, Jun 7, 2023 at 02:09 Stella ***@***.***> wrote: Hi, I encountered a problem that I was able to solve in the end but thought might be of interest rising: I had first installed TempestExtremes on a new machine using conda. I wanted to generate the connectivity file from the a SCRIP file <https://sharebox.lsce.ipsl.fr/index.php/s/5jMzJacBHlWTq10>, and here was the output: bash-4.4$ GenerateConnectivityFile --in_mesh scrip.nc --out_connect out.txt Arguments: --in_mesh <string> ["scrip.nc"] --in_concave <bool> [false] --out_type <string> ["FV"] [FV|CGLL|DGLL] --out_np <integer> [4] --out_connect <string> ["out.txt"] ------------------------------------------------------------ Loading mesh ..SCRIP Format File detected ..13107188 duplicate nodes detected ..Mesh size: Nodes [2621452] Elements [5242880] ..Done Calculating connectivity information ..Mesh size: Edges [7864332] ..Done Converting mesh to connectivity format ..EXCEPTION (/home/conda/feedstock_root/build_artifacts/tempest-extremes_1643338652905/work/src/base/SimpleGrid.cpp, Line 794) EdgeMap FacePair out of range (-1) In the meantime, I had managed to install and compile the package via make, and when using this version, the exact same command line worked! > ./tempestextremes/bin/GenerateConnectivityFile --in_mesh scrip.nc --out_connect connect.txt Arguments: --in_mesh <string> ["scrip.nc"] --in_concave <bool> [false] --out_type <string> ["FV"] [FV|CGLL|DGLL] --out_np <integer> [4] --out_connect <string> ["connect.txt"] ------------------------------------------------------------ Loading mesh ..SCRIP Format File detected ..13107188 duplicate nodes detected ..Mesh size: Nodes [2621452] Elements [5242880] ..Done Calculating connectivity information ..WARNING: 812 small elements found ..Mesh size: Edges [7864332] ..Done Converting mesh to connectivity format ..One-sided edges: 24 ..Total calculated area: 6.138748655767176e-01 sr ..Done Writing connectivity file.. Done ------------------------------------------------------------ Regards, Stella — Reply to this email directly, view it on GitHub <#55>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABIVPZD7NFUV6PWIGROOCU3XKBAMLANCNFSM6AAAAAAY5RY7XM> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>