packages2.3.1.xml

<packages>

    <package name='BDSKY' version='1.2.2'
           url="https://github.com/BEAST2-Dev/bdsky/releases/download/1.2.2/BDSKY.addon.1.2.2.zip"
           description="birth death skyline - handles serially sampled tips, piecewise constant rate changes through time and sampled ancestors">
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name='BEASTLabs' version='1.3.5'
           url="https://github.com/BEAST2-Dev/BEASTLabs/releases/download/v1.3.0/BEASTlabs.addon.v1.3.5.zip"
           description="BEAST utilities, such as multi threaded treeliklihood, Script">
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name='BEAST_CLASSIC' version='1.2.1'
           url="https://github.com/BEAST2-Dev/beast-classic/releases/download/v1.2.0/BEAST_CLASSIC.addon.v1.2.1.zip"
           description="BEAST classes ported from BEAST 1 in wrappers" >
        <depends on='beast2' atleast='2.3.0'/>
        <depends on='BEASTLabs' atleast='1.3.0'/>
    </package>

    <package name='GEO_SPHERE' version='0.1.4'
           url="https://github.com/BEAST2-Dev/beast-geo/releases/download/v0.0.6/GEO_SPHERE.addon.v0.1.4.zip"
           description="Whole world phylogeography" >
        <depends on='beast2' atleast='2.3.1'/>
    </package>

    <package name='CA' version='1.1.0'
           url="https://github.com/BEAST2-Dev/cladeage/releases/download/v1.1.0/CA.addon.v1.1.0.zip"
           description="CladeAge aPackage for fossil calibrations">
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name='MASTER' version='4.1.3'
           url="https://github.com/CompEvol/MASTER/releases/download/v4.1.3/MASTER.package.v4.1.3.zip"
           description="Stochastic population dynamics simulation" >
        <depends on='beast2' atleast='2.2.0'/>
    </package>

    <package name='MultiTypeTree' version='5.5.0'
           url="https://github.com/CompEvol/MultiTypeTree/releases/download/v5.5.0/MultiTypeTree.v5.5.0.zip"
           description="Structured coalescent inference" >
        <depends on='beast2' atleast='2.3.2'/>
    </package>
    
    <package name='bacter' version='1.0.0-pre6'
           url="https://github.com/CompEvol/bacter/releases/download/v1.0.0-pre6/bacter.v1.0.0-pre6.zip"
           description="ClonalOrigin ARG inference." >
        <depends on='beast2' atleast='2.3.2'/>
    </package>

    <package name='DISSECT' version='1.2.0'
             url="http://www.indriid.com/2015/DISSECT.addon.v1.2.0.zip"
             description="Species delimitation with *BEAST">
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name='STACEY' version='1.1.1'
             url="http://www.indriid.com/2016/STACEY.addon.v1.1.1.zip"
             description="Species delimitation and species tree estimation">
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name="MODEL_SELECTION" version="1.1.3"
            url="https://github.com/BEAST2-Dev/model-selection/releases/download/v1.1.0/MODEL_SELECTION.addon.v1.1.3.zip"
            description="Select models through path sampling/stepping stone analysis">
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name='phylodynamics' version='1.1.2'
           url="https://github.com/BEAST2-Dev/phylodynamics/releases/download/1.1.2/phylodynamics.addon.1.1.2.zip"
           description="birth death skyline model" >
        <depends on='beast2' atleast='2.3.0'/>
        <depends on='BDSKY' atleast='1.2.2'/>
    </package>

    <package name='RBS' version='1.2.5'
           url="https://github.com/BEAST2-Dev/rb-beast/releases/download/v1.2.0/RBS.addon.v1.2.5.zip"
           description="Reversible-jump Based substitution model" >
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name='SA' version='1.1.3'
           url="https://github.com/CompEvol/sampled-ancestors/releases/download/v1.1.3/SA.addon.v1.1.3.zip"
           description="Sampled ancestor trees" >
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name='SNAPP' version='1.2.5'
           url="https://github.com/BEAST2-Dev/SNAPP/releases/download/v1.2.0/SNAPP.addon.v1.2.5.zip"
           description="SNP and AFLP Phylogenies" >
        <depends on='beast2' atleast='2.3.1'/>
    </package>

    <package name='SubstBMA' version='1.2.0'
           url="https://github.com/BEAST2-Dev/subst-bma/releases/download/v1.2.0/SubstBMA.addon.v1.2.0.zip"
           description="Substitution Bayesian Model Averaging" >
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name='BEASTShell' version='1.2.0'
           url="https://github.com/CompEvol/beastshell/releases/download/0.0.2/BEASTShell.addon.v1.2.0.zip"
           description="BEAST Shell - BeanShell scripting for BEAST">
        <depends on='beast2' atleast='2.3.0'/>
    </package>
    
    <package name='morph-models' version='1.0.3'
            url="https://github.com/CompEvol/morph-models/releases/download/v1.0.3/MM.addon.v1.0.3.zip"
            description="Enables models of morphological chatacter evolution">
        <depends on='beast2' atleast='2.3.0'/>
    </package>
       
    <package name='MGSM' version='0.1.3'
            url="https://github.com/BEAST2-Dev/MGSM/releases/download/0.0.1/MSGM.addon.v0.1.3.zip"
            description="Multi-gamma and relaxed gamma site models">
        <depends on='beast2' atleast='2.3.0'/>
    </package>
        
    <package name='bModelTest' version='0.1.3'
            url="https://github.com/BEAST2-Dev/bModelTest/releases/download/0.0.1/bModelTest.addon.v0.1.3.zip"
            description="Bayesian model test for nucleotide subst models, gamma rate heterogeneity and invariant sites">
        <depends on='beast2' atleast='2.3.0'/>
    </package>

    <package name='BASTA' version='2.1.0'
            url="https://bitbucket.org/nicofmay/basta-bayesian-structured-coalescent-approximation/raw/6e46a2725807eb67a90119033f8546cb6115c802/dist/BASTA.v2.1.0.zip"
            description="Bayesian structured coalescent approximation">
        <depends on='beast2' atleast='2.3.1'/>
    </package>
    
    <package name='SCOTTI' version='1.0.1'
            url="https://bitbucket.org/nicofmay/scotti/raw/master/SCOTTI/dist/SCOTTI.v1.0.1.zip"
            description="Structured COalescent Transmission Tree Inference">
        <depends on='beast2' atleast='2.2.1'/>
    </package>


    <package name='PoMo' version='0.1.1'
            url="https://bitbucket.org/nicofmay/pomo-beast/raw/master/dist/PoMo.v0.1.1.zip"
            description="PoMo, a substitution model that separates mutation and drift processes">
        <depends on='beast2' atleast='2.2.1'/>
    </package>

</packages>