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problem with SelectTFs #23

@Dalhte

Description

@Dalhte

Hello there
I'm tryingto run ScMega on 10X multiome RNA+ATAC data obtained in Rats tissus. When I run the :
res <- SelectTFs(object = objG,
tf.assay = "chromvar",
rna.assay = "RNA",
atac.assay = "ATAC",
trajectory.name = "Trajectory",
return.heatmap = TRUE,
cor.cutoff = 0.1)
I get
Avis : No layers found matching search pattern provided
Error in GetAssayData():
! No layers are found
Here are the backtrace :
Backtrace:

  1. └─scMEGA::SelectTFs(...)
  2. ├─base::suppressMessages(...)
  3. │ └─base::withCallingHandlers(...)
  4. └─scMEGA::GetTrajectory(...)
  5. ├─SeuratObject::GetAssayData(object, assay = assay, slot = slot)
    
  6. └─SeuratObject:::GetAssayData.Seurat(object, assay = assay, slot = slot)
    
  7.   ├─SeuratObject::GetAssayData(object = object[[assay]], layer = layer)
    
  8.   └─SeuratObject:::GetAssayData.StdAssay(object = object[[assay]], layer = layer)
    
  9.     └─rlang::abort("No layers are found")
    

Can you help me, please ? Is it because I'm working with the rat genome? Or is it something else entirely?
Best
David

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