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mevis update #1

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CreMoProduction opened this issue Nov 15, 2021 · 2 comments
Open

mevis update #1

CreMoProduction opened this issue Nov 15, 2021 · 2 comments
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enhancement New feature or request

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@CreMoProduction
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if Avg - get p-value from ANNOVA [plot jitter plot with error bars (st.dev + avg)]
if Median - get p-value from Kruskal Wallis [plot jitter with box and quartile]
Output:

  • plot Box plot and jitter plot with st.dev side by side
  • plot volcano plot
  • export xls file
@CreMoProduction CreMoProduction added the enhancement New feature or request label Nov 15, 2021
@CreMoProduction CreMoProduction self-assigned this Nov 15, 2021
@CreMoProduction
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CreMoProduction commented Nov 15, 2021

export xls file with columns:

  • metabolite name
  • time fold change (FC) based on Median
  • p-value based on Median
  • time fold change (FC) based on Avg
  • p-value based on Avg
  • Avg peak area for all conditions
  • Median peak area for all conditions
  • St.Dev for all conditions

@CreMoProduction
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CreMoProduction commented Nov 15, 2021

  • User can set prior condition (set No of column) to use it for time fold change calculation.
  • Calculate peak areas for all conditions using median or average.
  • If time fold change (FC) (difference) meets at least one of variable from average or median peak area, include it into sorter list.
  • Plot side by side plots (parametric and non-parametric)
  • Plot 2 volcano plot: parametric and non-parametric [volcano plot of -log2 fold change versus log10 p-value]

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