.gitlab-ci.yml

image: "python:3.8"

# run on branches
.only_branches: &only_branches
  only:
    - master
    - dev
    - cli

variables:
  RUN: "bidsme"
  EXAMPLE_URL: "https://gitlab.uliege.be/CyclotronResearchCentre/Public/bidstools/bidsme/bidsme_example/-/archive/master/"
  EXAMPLE_DIR: "bidsme_example-master"

cache:
  paths:
    - .cache/pip

before_script: 
  - python --version
  - mkdir -p .cache/pip
  - pip --cache-dir=.cache/pip install .
  - pip --cache-dir=.cache/pip install flake8
  - pip --cache-dir=.cache/pip install openpyxl
  - pip --cache-dir=.cache/pip install anybadge
  - pip --cache-dir=.cache/pip install coverage

stages:
  - test
  - get_examples
  - run_examples
  - decoration

flake8:
  stage: test
  script:
    - python -m flake8 bidsme
  allow_failure: true
    
include_test:
  stage: test
  script:
    - $RUN --help
    - $RUN --version
    - $RUN process --help
    - $RUN prepare --help
    - $RUN bidsify --help
    - $RUN map --help

unittest:
  stage: test
  script:
    - coverage run -m unittest

get_examples:
  stage: get_examples
  artifacts:
    paths:
      - $EXAMPLE_DIR
    expire_in: 1 day
  script: 
    - wget -nv $EXAMPLE_URL/$EXAMPLE_DIR.tar.gz
    - tar -xzf $EXAMPLE_DIR.tar.gz
    - ls
  <<: *only_branches

example1:
  stage: run_examples
  script:
    - cd $EXAMPLE_DIR/example1
    - $RUN prepare source/ renamed/ -r nii=MRI --part-template resources/participants.json --plugin resources/plugins/rename_plugin.py
    - mkdir -p bids/code/bidsme
    - cp resources/map/bidsmap.yaml bids/code/bidsme/.
    - $RUN map renamed/ bids/ --plugin resources/plugins/bidsify_plugin.py
    - $RUN process renamed/ bids/ --plugin resources/plugins/process_plugin.py
    - $RUN bidsify renamed/ bids/ --plugin resources/plugins/bidsify_plugin.py
  <<: *only_branches


badges:
  stage: decoration
  artifacts:
    paths:
        - ver.svg
        - bids.svg
  script:
    - anybadge -o --value=$(cat ${CI_PROJECT_DIR}/bidsme/version.txt) --label=version --file=ver.svg --color=blue
    - anybadge -o --value=$(bidsme --version-bids) --label=BIDS --file=bids.svg --color=blue
  only:
    - dev
    - tag