From 25e8dfa7d5f4be80e454e706f0b76c2b1587310e Mon Sep 17 00:00:00 2001 From: bioatmosphere Date: Tue, 5 Apr 2022 09:39:31 -0400 Subject: [PATCH 1/2] updated latest publication info --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 0fbd434..158d753 100755 --- a/README.md +++ b/README.md @@ -35,7 +35,7 @@ DEMENTpy, initiated with in mind practicing **Real Open Science**, is devoted to ### Structure and Process -This model is built upon its predecessor--DEMENT, an R-based framework initially developed by Steven Allison back in 2012. Except for the programming language change, a series of changes have been made with an overarching goal of making it more readily accessible to the research and teaching communities as broad as microbial ecology, theoretical ecology, and ecosystem ecology, as well as biology. This model simulates processes ranging from degradation of substrates through microbial processes encompassing uptake, metabolism, mortality, reproduction, and dispersal in a spatially explicit, mechanistically explicit fashion. For more detailed information about DEMENTpy, we refer readers/users temporarily to an [Appendix](https://github.com/bioatmosphere/microbiome-drought-legacy/tree/master/writing) of the 1st manuscript applying this model. An actual documentation is under conceving. +This model is built upon its predecessor--DEMENT, an R-based framework initially developed by Steven Allison back in 2012. Except for the programming language change, a series of changes have been made with an overarching goal of making it more readily accessible to the research and teaching communities as broad as microbial ecology, theoretical ecology, and ecosystem ecology, as well as biology. This model simulates processes ranging from degradation of substrates through microbial processes encompassing uptake, metabolism, mortality, reproduction, and dispersal in a spatially explicit, mechanistically explicit fashion. For more detailed information about DEMENTpy, we refer readers/users temporarily to an [Appendix](https://github.com/bioatmosphere/microbiome-drought-legacy/tree/master/writing) of the 1st manuscript applying this model. An actual documentation is under conceiving. ### Run DEMENTpy @@ -67,7 +67,7 @@ A simple example of bash script, dementpy.sh, for running jobs on HPC is provide The space for contribution is HUGE and OPEN! For instance: - New processes/algorithms are more than welcome. -- Programming improvment are absolutely needed. +- Programming improvment is absolutely needed. - Any bugs are possible. - ... @@ -79,7 +79,7 @@ Feel free to reach out, or directly fork, change, and create pull requests, or c ### References -1. Wang, B., & Steven D. Allison. (2022) [Climate-driven legacies in simulated microbial communities alter litter decomposition rates](https://www.frontiersin.org/articles/10.3389/fevo.2022.841824). Frontiers in Ecology and Evolution (in press) +1. Wang, B., & Steven D. Allison. (2022) [Climate-driven legacies in simulated microbial communities alter litter decomposition rates](https://www.frontiersin.org/articles/10.3389/fevo.2022.841824). Frontiers in Ecology and Evolution 10,841824 2. Wang, B., & Steven D. Allison. (2021) [Drought Legacies Mediated by Trait Tradeoffs in Soil Microbiomes]( https://doi.org/10.1002/ecs2.3562). Ecosphere 12, e03562 From d562324db8229a70a9906eb1ffdfbee67e7db9cf Mon Sep 17 00:00:00 2001 From: Bin Wang Date: Mon, 20 Jun 2022 20:16:13 -0400 Subject: [PATCH 2/2] minor language correction --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index b5c1f03..4385ac6 100755 --- a/README.md +++ b/README.md @@ -23,7 +23,7 @@ ![GitHub forks](https://img.shields.io/github/forks/bioatmosphere/DEMENTpy?style=social) -This model is spatially and mechanistically explicit in simulating a microbial system comprised of a large number of hypothetical microbial taxa in terrestial environments. As indicated by the 'py' in its name, DEMENTpy is developed and programmed in Python, based on its predecesor [DEMENT](https://github.com/stevenallison/DEMENT) developed by Steven Allison (promgrammed in R). +This model is spatially and mechanistically explicit in simulating a microbial system comprising a large number of hypothetical microbial taxa in terrestial environments. As indicated by the 'py' in its name, DEMENTpy is developed and programmed in Python, based on its predecesor [DEMENT](https://github.com/stevenallison/DEMENT) developed by Steven Allison (promgrammed in R).

@@ -67,7 +67,7 @@ A simple example of bash script, dementpy.sh, for running jobs on HPC is provide The space for contribution is HUGE and OPEN! For instance: - New processes/algorithms are more than welcome. -- Programming improvment is absolutely needed. +- Programming improvement is absolutely needed. - Any bugs are possible. - ...