DESCRIPTION

Package: DropletUtils
Version: 1.7.3
Date: 2020-01-26
Title: Utilities for Handling Single-Cell Droplet Data
Authors@R: c(
    person("Aaron", "Lun", role = c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"), 
    person("Jonathan", "Griffiths", role="ctb"), 
    person("Davis", "McCarthy", role="ctb"))
Depends: SingleCellExperiment
Imports: 
    S4Vectors,
    BiocParallel,
    Rcpp,
    Matrix,
    methods,
    utils,
    stats,
    edgeR,
    rhdf5,
    HDF5Array,
    R.utils,
    dqrng
Suggests: 
    testthat,
    beachmat,
    knitr,
    BiocStyle,
    rmarkdown
biocViews: 
    ImmunoOncology,
    SingleCell,
    Sequencing,
    RNASeq,
    GeneExpression,
    Transcriptomics,
    DataImport,
    Coverage
Description: 
    Provides a number of utility functions for handling single-cell 
    (RNA-seq) data from droplet technologies such as 10X Genomics. This 
    includes data loading from count matrices or molecule information files, 
    identification of cells from empty droplets, removal of barcode-swapped 
    pseudo-cells, and downsampling of the count matrix.
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
LinkingTo: Rcpp, beachmat, Rhdf5lib, BH, dqrng
SystemRequirements: C++11, GNU make
RoxygenNote: 7.0.2