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Dockerfile
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# Build the source
FROM docker.io/library/node:18.14.1-alpine@sha256:045b1a1c90bdfd8fcaad0769922aa16c401e31867d8bf5833365b0874884bbae as builder
WORKDIR /code
# First install dependencies. This part will be cached as long as
# the package.json file remains identical.
COPY package.json /code/
RUN npm install
# Build code
COPY ./build /code/build
COPY ./js /code/js
RUN npm run build:docker
# Statically pre-compress all output files to be served
COPY ./index.html /code/index.html
RUN find . -type f "(" \
-name "*.css" \
-o -name "*.html" \
-o -name "*.js" ! -name "config-local.js" \
-o -name "*.json" \
-o -name "*.svg" \
-o -name "*.xml" \
")" -print0 \
| xargs -0 -n 1 gzip -kf
# Production Nginx image
FROM docker.io/nginxinc/nginx-unprivileged:1.23.3-alpine@sha256:c748ba587e7436aaa8729b64d4e0412410a486f0c592f0eec100fb3804ff9afd
LABEL org.opencontainers.image.title="OHDSI-Atlas"
LABEL org.opencontainers.image.authors="Joris Borgdorff <[email protected]>, Lee Evans - www.ltscomputingllc.com, Shaun Turner<[email protected]>"
LABEL org.opencontainers.image.description="ATLAS is an open source software tool for researchers to \
conduct scientific analyses on standardized observational data"
LABEL org.opencontainers.image.licenses="Apache-2.0"
LABEL org.opencontainers.image.vendor="OHDSI"
LABEL org.opencontainers.image.source="https://github.com/OHDSI/Atlas"
# URL where WebAPI can be queried by the client
ENV USE_DYNAMIC_WEBAPI_URL="false"
ENV DYNAMIC_WEBAPI_SUFFIX="/WebAPI/"
ENV WEBAPI_URL="http://localhost:8080/WebAPI/"
ENV CONFIG_PATH="/etc/atlas/config-local.js"
ENV ATLAS_INSTANCE_NAME="OHDSI"
ENV ATLAS_COHORT_COMPARISON_RESULTS_ENABLED="false"
ENV ATLAS_USER_AUTH_ENABLED="false"
ENV ATLAS_PLP_RESULTS_ENABLED="false"
ENV ATLAS_CLEAR_LOCAL_STORAGE="false"
ENV ATLAS_DISABLE_BROWSER_CHECK="false"
ENV ATLAS_ENABLE_PERMISSIONS_MGMT="true"
ENV ATLAS_CACHE_SOURCES="false"
ENV ATLAS_POLL_INTERVAL="60000"
ENV ATLAS_SKIP_LOGIN="false"
ENV ATLAS_USE_EXECUTION_ENGINE="false"
ENV ATLAS_VIEW_PROFILE_DATES="false"
ENV ATLAS_ENABLE_COSTS="false"
ENV ATLAS_SUPPORT_URL="https://github.com/ohdsi/atlas/issues"
ENV ATLAS_SUPPORT_MAIL="[email protected]"
ENV ATLAS_FEEDBACK_CONTACTS="For access or questions concerning the Atlas application please contact:"
ENV ATLAS_FEEDBACK_HTML=""
ENV ATLAS_COMPANYINFO_HTML=""
ENV ATLAS_COMPANYINFO_SHOW="true"
ENV ATLAS_DEFAULT_LOCALE="en"
ENV ATLAS_SECURITY_WIN_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_WIN_PROVIDER_NAME="Windows"
ENV ATLAS_SECURITY_WIN_PROVIDER_URL="user/login/windows"
ENV ATLAS_SECURITY_WIN_PROVIDER_AJAX="true"
ENV ATLAS_SECURITY_WIN_PROVIDER_ICON="fab fa-windows"
ENV ATLAS_SECURITY_KERB_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_KERB_PROVIDER_NAME="Kerberos"
ENV ATLAS_SECURITY_KERB_PROVIDER_URL="user/login/kerberos"
ENV ATLAS_SECURITY_KERB_PROVIDER_AJAX="true"
ENV ATLAS_SECURITY_KERB_PROVIDER_ICON="fab fa-windows"
ENV ATLAS_SECURITY_OID_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_OID_PROVIDER_NAME="OpenID Connect"
ENV ATLAS_SECURITY_OID_PROVIDER_URL="user/login/openid"
ENV ATLAS_SECURITY_OID_PROVIDER_AJAX="false"
ENV ATLAS_SECURITY_OID_PROVIDER_ICON="fa fa-openid"
ENV ATLAS_SECURITY_GGL_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_GGL_PROVIDER_NAME="Google"
ENV ATLAS_SECURITY_GGL_PROVIDER_URL="user/oauth/google"
ENV ATLAS_SECURITY_GGL_PROVIDER_AJAX="false"
ENV ATLAS_SECURITY_GGL_PROVIDER_ICON="fab fa-google"
ENV ATLAS_SECURITY_FB_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_FB_PROVIDER_NAME="Facebook"
ENV ATLAS_SECURITY_FB_PROVIDER_URL="user/oauth/facebook"
ENV ATLAS_SECURITY_FB_PROVIDER_AJAX="false"
ENV ATLAS_SECURITY_FB_PROVIDER_ICON="fab fa-facebook-f"
ENV ATLAS_SECURITY_GH_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_GH_PROVIDER_NAME="Github"
ENV ATLAS_SECURITY_GH_PROVIDER_URL="user/oauth/github"
ENV ATLAS_SECURITY_GH_PROVIDER_AJAX="false"
ENV ATLAS_SECURITY_GH_PROVIDER_ICON="fab fa-github"
ENV ATLAS_SECURITY_DB_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_DB_PROVIDER_NAME="DB"
ENV ATLAS_SECURITY_DB_PROVIDER_URL="user/login/db"
ENV ATLAS_SECURITY_DB_PROVIDER_AJAX="true"
ENV ATLAS_SECURITY_DB_PROVIDER_ICON="fa fa-database"
ENV ATLAS_SECURITY_DB_PROVIDER_CREDFORM="true"
ENV ATLAS_SECURITY_LDAP_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_LDAP_PROVIDER_NAME="LDAP"
ENV ATLAS_SECURITY_LDAP_PROVIDER_URL="user/login/ldap"
ENV ATLAS_SECURITY_LDAP_PROVIDER_AJAX="true"
ENV ATLAS_SECURITY_LDAP_PROVIDER_ICON="fa fa-cubes"
ENV ATLAS_SECURITY_LDAP_PROVIDER_CREDFORM="true"
ENV ATLAS_SECURITY_SAML_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_SAML_PROVIDER_NAME="SAML"
ENV ATLAS_SECURITY_SAML_PROVIDER_URL="user/login/saml"
ENV ATLAS_SECURITY_SAML_PROVIDER_AJAX="false"
ENV ATLAS_SECURITY_SAML_PROVIDER_ICON="fab fa-openid"
ENV ATLAS_SECURITY_AD_PROVIDER_ENABLED="false"
ENV ATLAS_SECURITY_AD_PROVIDER_NAME="Active Directory LDAP"
ENV ATLAS_SECURITY_AD_PROVIDER_URL="user/login/ad"
ENV ATLAS_SECURITY_AD_PROVIDER_AJAX="true"
ENV ATLAS_SECURITY_AD_PROVIDER_ICON="fa fa-cubes"
ENV ATLAS_SECURITY_AD_PROVIDER_CREDFORM="true"
# for existing broadsea implementations
ENV ATLAS_SECURITY_PROVIDER_ENABLED="true"
ENV ATLAS_SECURITY_PROVIDER_NAME="none"
ENV ATLAS_SECURITY_PROVIDER_TYPE="none"
ENV ATLAS_SECURITY_USE_AJAX="false"
ENV ATLAS_SECURITY_PROVIDER_ICON="fa-cubes"
ENV ATLAS_SECURITY_USE_FORM="false"
ENV ATLAS_ENABLE_TANDCS="true"
ENV ATLAS_ENABLE_PERSONCOUNT="true"
ENV ATLAS_ENABLE_TAGGING_SECTION="false"
ENV ATLAS_REFRESH_TOKEN_THRESHOLD="240"
# Configure webserver
COPY ./docker/nginx-default.conf /etc/nginx/conf.d/default.conf
COPY ./docker/optimization.conf /etc/nginx/conf.d/optimization.conf
COPY ./docker/30-atlas-env-subst.sh /docker-entrypoint.d/30-atlas-env-subst.sh
# Load code
COPY ./images /usr/share/nginx/html/atlas/images
COPY ./README.md ./LICENSE /usr/share/nginx/html/atlas/
COPY --from=builder /code/index.html* /usr/share/nginx/html/atlas/
COPY --from=builder /code/node_modules /usr/share/nginx/html/atlas/node_modules
COPY --from=builder /code/js /usr/share/nginx/html/atlas/js
# Load Atlas local config with current user, so it can be modified
# with env substitution
COPY --chown=101 docker/config-local.js /usr/share/nginx/html/atlas/js/config-local.js