Update packages

Author: martabica

dea/Dockerfile

@@ -23,16 +23,17 @@ RUN R -e 'install.packages("DT", repos="https://packagemanager.rstudio.com/cran/
 RUN R -e 'install.packages("ff", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
 RUN R -e 'install.packages("ggfun", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-27")'
 RUN R -e 'install.packages("ggplot2", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-12-23")'
+RUN R -e 'install.packages("ggplotify", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")'
 RUN R -e 'install.packages("ggpubr", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-09-19")'
-RUN R -e 'install.packages("ggrepel", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
-RUN R -e 'install.packages("ggridges")'
+RUN R -e 'install.packages("ggrepel", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")'
+RUN R -e 'install.packages("ggridges", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")'
 RUN R -e 'install.packages("gridExtra", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
 RUN R -e 'install.packages("magrittr", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-12-23")'
 RUN R -e 'install.packages("Matrix", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-01-20")'
+RUN R -e 'install.packages("patchwork", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")'
 RUN R -e 'install.packages("plotly", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-04-20")'
 RUN R -e 'install.packages("matrixStats", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
 RUN R -e 'install.packages("memuse", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
-RUN R -e 'install.packages("plotly", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
 RUN R -e 'install.packages("reshape2", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
 RUN R -e 'install.packages("Seurat", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2022-05-20")'
 RUN R -e 'install.packages("shiny", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2021-04-23")'
@@ -52,7 +53,7 @@ RUN R -e 'BiocManager::install("MAST")'
 RUN R -e 'install.packages("devtools")'
 RUN R -e 'remotes::install_github("YuLab-SMU/ggtree")'
 RUN R -e 'devtools::install_github("XiaoLuo-boy/ggheatmap")' 
-RUN R -e 'remotes::install_github("ChristophH/gplots")'
+RUN R -e 'install.packages("gplots", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")'
 
 # Set the working directory
 WORKDIR /home/app