Update Dockerfile

Author: martabica

settings/Dockerfile

@@ -21,15 +21,18 @@ RUN R -e 'install.packages("data.table", repos="https://packagemanager.rstudio.c
 RUN R -e 'install.packages("dplyr", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
 RUN R -e 'install.packages("DT", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
 RUN R -e 'install.packages("ff", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
+RUN R -e 'install.packages("ggfun", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-27")'
 RUN R -e 'install.packages("ggplot2", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-12-23")'
+RUN R -e 'install.packages("ggplotify", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")'
 RUN R -e 'install.packages("ggpubr", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-09-19")'
-RUN R -e 'install.packages("ggrepel", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
-RUN R -e 'install.packages("ggridges")'
+RUN R -e 'install.packages("ggrepel", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")'
+RUN R -e 'install.packages("ggridges", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")'
 RUN R -e 'install.packages("gridExtra", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
 RUN R -e 'install.packages("magrittr", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-12-23")'
 RUN R -e 'install.packages("Matrix", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-01-20")'
 RUN R -e 'install.packages("matrixStats", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
-RUN R -e 'install.packages("plotly", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2023-04-20")'
+RUN R -e 'install.packages("patchwork", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")'
+RUN R -e 'install.packages("plotly", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-04-20")'
 RUN R -e 'install.packages("shiny", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2021-04-23")'
 RUN R -e 'install.packages("shinycssloaders", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2021-04-23")'
 RUN R -e 'install.packages("shinydashboard", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2021-04-23")'
@@ -42,7 +45,7 @@ RUN R -e 'install.packages("BiocManager")'
 RUN R -e 'BiocManager::install("BiocSingular")'
 
 RUN R -e 'install.packages("devtools")'
-RUN R -e 'remotes::install_github("ChristophH/gplots")'  
+RUN R -e 'install.packages("gplots", repos="https://packagemanager.rstudio.com/cran/__linux__/focal/2024-10-20")' 
 
 # Set the working directory
 WORKDIR /home/app