From 2d8a831ebd5f5941053bf70a1fb72b8e91981f14 Mon Sep 17 00:00:00 2001 From: tcezard Date: Thu, 5 Sep 2024 14:53:53 +0100 Subject: [PATCH] gzip open default to binary so force to text --- eva_submission/samples_checker.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/eva_submission/samples_checker.py b/eva_submission/samples_checker.py index a8ddd8e..d42affd 100644 --- a/eva_submission/samples_checker.py +++ b/eva_submission/samples_checker.py @@ -15,7 +15,7 @@ def get_samples_from_vcf_manual(vcf_file): Get the list of samples present in a single VCF file """ if vcf_file.endswith('.gz'): - open_file = gzip.open(vcf_file, 'r') + open_file = gzip.open(vcf_file, 'rt') else: open_file = open(vcf_file, 'r') try: