ci_examples.yaml

name: CI example notebooks

on:
  push:
    branches:
      - "*"
      - "!v[0-9]+.[0-9]+.[0-9]+*"
  pull_request:
    branches:
      - "*"
      - "!v[0-9]+.[0-9]+.[0-9]+*"

jobs:

  test:
    name: ${{ matrix.os}} py${{ matrix.python-version }}

    runs-on: ${{ matrix.os }}

    defaults:
      run:
        shell: bash -l {0}

    strategy:
      fail-fast: false
      matrix:
        os: [ "ubuntu-latest" ]
        python-version: [ "3.10"]

    steps:
      - name: Checkout repo
        uses: actions/checkout@v2.4.0

      - name: Setup gfortran
        uses: fortran-lang/setup-fortran@v1
        with:
          compiler: gcc
          version: 11

      - name: Set environment variables
        run: |
          echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV
          echo "SETUPTOOLS_ENABLE_FEATURES=legacy-editable" >> $GITHUB_ENV

      - name: Setup micromamba
        uses: mamba-org/setup-micromamba@v1.9.0
        with:
          micromamba-version: '1.5.10-0'
          environment-file: environment_w_jupyter.yml
          cache-environment: true
          cache-downloads: true

      - name: Checkout MODFLOW 6
        uses: actions/checkout@v4
        with:
          repository: MODFLOW-USGS/modflow6
          ref: develop
          path: modflow6

      - name: Update flopy MODFLOW 6 classes
        working-directory: modflow6/autotest
        run: |
          python update_flopy.py

      - name: Install mf6 nightly build binaries
        uses: modflowpy/install-modflow-action@v1
        with:
          repo: modflow6-nightly-build

      - name: Install error reporter
        run: |
          pip install pytest-github-actions-annotate-failures

      - name: Install dependencies and this package
        run: |
          pip install -e .

      - name: Version info
        run: |
          echo -------
          conda info -a
          echo -------
          conda list
          echo -------
          pip -V
          echo -------
          pip list

      - name: Import pywatershed
        run: |
          python -c "import pywatershed"

      - name: Get GIS files for tests
        run: |
          python pywatershed/utils/gis_files.py

      - name: Get additional domain files for notebooks
        run: |
          python pywatershed/utils/addtl_domain_files.py

      - name: Run tests
        working-directory: autotest_exs
        run: |
          pytest -s -vv  --durations=0