New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add support for additional/arbitrary masks denoting higher-order tissue structures #4

Open

5 tasks

afrendeiro opened this issue May 8, 2020 · 0 comments

Assignees

Labels

Member

afrendeiro commented May 8, 2020

Manually label structures (arteries lumen, extra cellular matrix) in image training data set
Predict for whole images
Segment structures or alternatively quantify (mean) probabilities per cell
Analyse number per ROI, shape per ROI
For each cell: check if contained within structure, measure distance to border

afrendeiro self-assigned this

afrendeiro transferred this issue from another repository

afrendeiro added the enhancement label

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment