From 6d224e1f9ed13419cd9502de57898f9b0379d4ed Mon Sep 17 00:00:00 2001 From: MountainMan12 Date: Thu, 4 Jan 2024 20:23:28 +0530 Subject: [PATCH] initial commit --- DataModel/Biomarker/Biomarker-definition.yaml | 0 DataModel/Biomarker/Biomarker-docs.md | 0 DataModel/Biomarker/Biomarker-sample-data.json | 0 .../ClinicalHistory-definition.yaml | 0 .../ClinicalHistory/ClinicalHistory-docs.md | 0 .../ClinicalHistory-sample-data.json | 0 DataModel/Dataset/Dataset-definition.yaml | 0 DataModel/Dataset/Dataset-docs.md | 0 DataModel/Dataset/Dataset-sample-data.json | 0 DataModel/Diagnosis/Diagnosis-definition.yaml | 0 DataModel/Diagnosis/Diagnosis-docs.md | 0 DataModel/Diagnosis/Diagnosis-sample-data.json | 0 DataModel/Donor/Donor-definition.yaml | 0 DataModel/Donor/Donor-docs.md | 0 DataModel/Donor/Donor-sample-data.json | 0 DataModel/Exposure/Exposure-definition.yaml | 0 DataModel/Exposure/Exposure-docs.md | 0 DataModel/Exposure/Exposure-sample-data.json | 0 DataModel/Family/Family-definition.yaml | 0 DataModel/Family/Family-docs.md | 0 DataModel/Family/Family-sample-data.json | 0 DataModel/Method/Method-definition.yaml | 0 DataModel/Method/Method-docs.md | 0 DataModel/Method/Method-sample-data.json | 0 .../Publication/Publication-definition.yaml | 0 DataModel/Publication/Publication-docs.md | 0 .../Publication/Publication-sample-data.json | 0 DataModel/Sample/Sample-definition.yaml | 0 DataModel/Sample/Sample-docs.md | 0 DataModel/Sample/Sample-sample-data.json | 0 DataModel/Specimen/Specimen-definition.yaml | 0 DataModel/Specimen/Specimen-docs.md | 0 DataModel/Specimen/Specimen-sample-data.json | 0 DataModel/Therapy/Therapy-definition.yaml | 0 DataModel/Therapy/Therapy-docs.md | 0 DataModel/Therapy/Therapy-sample-data.json | 0 DataModel/assayData/assayData-definition.yaml | 0 DataModel/assayData/assayData-docs.md | 0 DataModel/assayData/assayData-sample-data.json | 0 Guidelines.md | 3 +++ README.md | 17 +++++++++++++++-- changelog.md | 0 contributions.yaml | 0 43 files changed, 18 insertions(+), 2 deletions(-) create mode 100644 DataModel/Biomarker/Biomarker-definition.yaml create mode 100644 DataModel/Biomarker/Biomarker-docs.md create mode 100644 DataModel/Biomarker/Biomarker-sample-data.json create mode 100644 DataModel/ClinicalHistory/ClinicalHistory-definition.yaml create mode 100644 DataModel/ClinicalHistory/ClinicalHistory-docs.md create mode 100644 DataModel/ClinicalHistory/ClinicalHistory-sample-data.json create mode 100644 DataModel/Dataset/Dataset-definition.yaml create mode 100644 DataModel/Dataset/Dataset-docs.md create mode 100644 DataModel/Dataset/Dataset-sample-data.json create mode 100644 DataModel/Diagnosis/Diagnosis-definition.yaml create mode 100644 DataModel/Diagnosis/Diagnosis-docs.md create mode 100644 DataModel/Diagnosis/Diagnosis-sample-data.json create mode 100644 DataModel/Donor/Donor-definition.yaml create mode 100644 DataModel/Donor/Donor-docs.md create mode 100644 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a/DataModel/assayData/assayData-docs.md b/DataModel/assayData/assayData-docs.md new file mode 100644 index 0000000..e69de29 diff --git a/DataModel/assayData/assayData-sample-data.json b/DataModel/assayData/assayData-sample-data.json new file mode 100644 index 0000000..e69de29 diff --git a/Guidelines.md b/Guidelines.md new file mode 100644 index 0000000..3bbfd07 --- /dev/null +++ b/Guidelines.md @@ -0,0 +1,3 @@ +# Data Model Contribution Manual + +*Under construction, stay tuned for updates* \ No newline at end of file diff --git a/README.md b/README.md index 8e2ac82..365eb38 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,15 @@ -# polly-data-model -Boilerplate for a unified biological data model for biomedical molecular data on Polly +# Polly Data Model +Boilerplate for a unified biological data model for biomedical molecular data on Polly. + +Data Models play a crucial role because they define the harmonised representation formats and semantics that will be used by applications both to consume and to manage data. + +This repository contains the data model defined in a json format that stores each biological entity alongwith relevant attributes that are contained within. Each entity is accompanied by examples data that can be stored using this data structure. + +**This repository only accepts changes through pull requests that will be reviewed by a team responsible for maintaining the data model.** + +## Contributions + +* All contributors of this repository must follow our [Contribution Guidelines](https://github.com/ElucidataInc/polly-data-model/blob/main/Guidelines.md). + + + diff --git a/changelog.md b/changelog.md new file mode 100644 index 0000000..e69de29 diff --git a/contributions.yaml b/contributions.yaml new file mode 100644 index 0000000..e69de29