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tree_data.json
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{
"name": "Project",
"children": [
{
"name": "Core",
"children": [
{
"name": "Project ID"
},
{
"name": "Summary"
},
{
"name": "Overall Design"
},
{
"name": "Donor derived dataset"
},
{
"name": "Organism"
},
{
"name": "Cell Line"
},
{
"name": "Author cell type"
},
{
"name": "Source Link"
},
{
"name": "Supplementary link(s)"
}
]
},
{
"name": "Publication",
"children": [
{
"name": "Abstract"
},
{
"name": "Authors"
},
{
"name": "Journal"
},
{
"name": "Publication Link"
},
{
"name": "Publication Title"
},
{
"name": "Publication Year"
},
{
"name": "Pubmed ID"
},
{
"name": "Total Number of Cells"
}
]
},
{
"name": "Trial",
"children": [
{
"name": "Author Trial"
},
{
"name": "Registry Name"
},
{
"name": "Registry Trial Id"
},
{
"name": "Location"
},
{
"name": "Region"
},
{
"name": "Sponsor"
},
{
"name": "Trial Year"
},
{
"name": "Trial Design"
},
{
"name": "Trial Blinding"
},
{
"name": "Primary Purpose"
},
{
"name": "Primary Drug"
},
{
"name": "Trial Duration"
},
{
"name": "Trial Phase"
},
{
"name": "Treatment Duration"
},
{
"name": "Condition Studied Trial"
},
{
"name": "Intervention Agent"
},
{
"name": "Objectives"
},
{
"name": "Sponsoring Organization"
},
{
"name": "Target Enrollment"
},
{
"name": "Number of arms"
},
{
"name": "Placebo"
},
{
"name": "Principal Investigator"
},
{
"name": "Recruiting status of the trial"
},
{
"name": "Intervention other than trial"
},
{
"name": "Observational studies"
},
{
"name": "Funder type"
},
{
"name": "Study documents"
}
]
},
{
"name": "Others",
"children": [
{
"name": "Publications"
},
{
"name": "HCA Bionetwork(s)"
},
{
"name": "INSDC project accession"
},
{
"name": "EGA Study/Dataset Accession(s)"
},
{
"name": "dbGaP Study Accession(s)"
},
{
"name": "GEO series accession"
},
{
"name": "ArrayExpress accessio"
},
{
"name": "INSDC study accession"
},
{
"name": "BioStudies accession"
},
{
"name": "Funding source(s)"
},
{
"name": "Estimated cell count"
},
{
"name": "Data use restriction"
},
{
"name": "DUOS ID"
}
]
},
{
"name": "Donor",
"children": [
{
"name": "Core",
"children": [
{
"name": "Project ID"
},
{
"name": "Donor ID"
},
{
"name": "Age"
},
{
"name": "Age_unit"
},
{
"name": "Developmental stage unit"
},
{
"name": "Developmental stage"
},
{
"name": "Gender"
},
{
"name": "Marital Status"
},
{
"name": "preMenopause cycle Type"
},
{
"name": "preMenopause cycle Duration"
},
{
"name": "Menstruation"
},
{
"name": "Occupation"
},
{
"name": "Cohort"
},
{
"name": "Strain characteristics"
},
{
"name": "Strain"
},
{
"name": "Country of Origin"
},
{
"name": "Race"
},
{
"name": "Ethnicity"
},
{
"name": "Number of Children"
},
{
"name": "Pregnancy"
},
{
"name": "Cause of Death"
}
]
},
{
"name": "Family History",
"children": [
{
"name": "Donor ID "
},
{
"name": "Relationship Age at Diagnosis"
},
{
"name": "Relationship gender"
},
{
"name": "Relationship primary diagnosis"
},
{
"name": "Relative with cancer history"
},
{
"name": "Relatives with cancer history count"
},
{
"name": "BRCA mutation carrier"
},
{
"name": "Relative's vital status"
},
{
"name": "Cause of death of relative"
},
{
"name": "Relatives survival time"
},
{
"name": "Family line"
},
{
"name": "Date of birth of relative"
},
{
"name": "Age at death of relative"
},
{
"name": "Biomarkers of disease in relative"
},
{
"name": "Exposure Type"
},
{
"name": "Exposure Duration"
},
{
"name": "Exposure Duration"
},
{
"name": "Exposure Frequency"
}
]
},
{
"name": "Clinical History",
"children": [
{
"name": "Donor ID"
},
{
"name": "Clinical history id"
},
{
"name": "Age at diagnosis"
},
{
"name": "Date of diagnosis"
},
{
"name": "Treatment for diagnosis"
},
{
"name": "Start date of symptoms"
},
{
"name": "End date of symptoms"
},
{
"name": "Symptoms at diagnosis"
},
{
"name": "Genetic disorder"
},
{
"name": "Prior malignancy"
},
{
"name": "Laterality of prior malignancy"
},
{
"name": "Allergy status"
},
{
"name": "Allergy type"
},
{
"name": "Previous treatments"
},
{
"name": "Failed Treatments"
},
{
"name": "Treatment Switch"
}
]
},
{
"name": "Exposure",
"children": [
{
"name": "Donor ID"
},
{
"name": "Exposure ID"
},
{
"name": "Event ID"
},
{
"name": "Exposure Type"
},
{
"name": "Exposure Duration"
},
{
"name": "Exposure Duration"
},
{
"name": "Exposure Frequency"
},
{
"name": "Diet"
},
{
"name": "Diet Duration"
},
{
"name": "Exercise"
},
{
"name": "Exercise Duration"
},
{
"name": "Time Between Waking And First exposure"
},
{
"name": "Exposure Category"
},
{
"name": "Exercise frequency"
},
{
"name": "Exercise intensity"
}
]
},
{
"name": "Measurement",
"children": [
{
"name": "Donor ID"
},
{
"name": "Event ID"
},
{
"name": "Measurement ID"
},
{
"name": "Date of Measurement"
},
{
"name": "Measurement Type"
},
{
"name": "Anatomical site of Measurement"
},
{
"name": "Measurement result"
},
{
"name": "Measurement result unit"
},
{
"name": "Reference Range"
}
]
},
{
"name": "Diagnosis",
"children": [
{
"name": "Donor ID"
},
{
"name": "Event ID"
},
{
"name": "Diagnosis ID"
},
{
"name": "Disease"
},
{
"name": "Disease Type"
},
{
"name": "Diagnosis Date"
},
{
"name": "Age at Diagnosis"
},
{
"name": "Symptoms Described"
},
{
"name": "Laterality"
},
{
"name": "Pathalogy Review"
},
{
"name": "Pathalogic Stage"
},
{
"name": "Method of Diagnosis"
},
{
"name": "Morphology"
},
{
"name": "Disease Classification"
},
{
"name": "Classification System"
},
{
"name": "Classification System Version"
},
{
"name": "Disease Stage"
},
{
"name": "Staging System"
},
{
"name": "Staging Sytem Version"
},
{
"name": "Disease Grade"
},
{
"name": "Grading System"
},
{
"name": "Grading Version"
},
{
"name": "Disease Group"
},
{
"name": "Margins involved Site"
},
{
"name": "Anaplasia Present Type"
},
{
"name": "Extranodal Involvement"
},
{
"name": "Enneking-msts Metastasis"
},
{
"name": "Enneking-msts Tumor site"
},
{
"name": "Presenting symptoms"
},
{
"name": "Gastric Esophageal Junction Involvement"
},
{
"name": "Gleason Patterns percent"
},
{
"name": "Goblet cells columnar mucosa present"
},
{
"name": "International prognostic index"
},
{
"name": "Ishak fibrosis score"
},
{
"name": "Largest extrapelvic peritoneal focus"
},
{
"name": "Lymph nodes examined status"
},
{
"name": "Lymph nodes examined method"
},
{
"name": "Number of lymph nodes positive"
},
{
"name": "Lymph node involved site"
},
{
"name": "Metastasis at diagnosis"
},
{
"name": "Metastasis at diagnosis site"
}
]
},
{
"name": "Specimen",
"children": [
{
"name": "core",
"children": [
{
"name": "Donor ID"
},
{
"name": "Diagnosis ID"
},
{
"name": "Event ID"
},
{
"name": "Tissue"
},
{
"name": "Sampling site"
},
{
"name": "Donor sample type"
},
{
"name": "Read Index"
},
{
"name": "Library preparation ID"
}
]
},
{
"name": "Cell-line",
"children": [
{
"name": "Growth Medium"
},
{
"name": "Culture Environment"
},
{
"name": "Nutritional state"
},
{
"name": "Storage method"
},
{
"name": "Storage duration"
},
{
"name": "Storage time unit"
},
{
"name": "Preservation method"
},
{
"name": "Autolysis score"
},
{
"name": "Gross description"
},
{
"name": "Gross images"
},
{
"name": "Ischemic temperature"
},
{
"name": "Ischemic time"
},
{
"name": "Microscopic description"
},
{
"name": "Microscopic images"
},
{
"name": "Postmortem interval"
},
{
"name": "Supplier"
},
{
"name": "Catalog number"
},
{
"name": "Lot/batch number"
},
{
"name": "Catalog URL"
},
{
"name": "Cell cycle"
},
{
"name": "Cell line type"
},
{
"name": "Organ model"
},
{
"name": "Cell morphology"
},
{
"name": "Growth conditions"
},
{
"name": "Percent confluency"
},
{
"name": "Karyotype"
},
{
"name": "Tissue"
},
{
"name": "Date established"
},
{
"name": "Disease"
},
{
"name": "Genus species"
},
{
"name": "Publication"
}
]
},
{
"name": "slide",
"children": [
{
"name": "Section location"
},
{
"name": "Bone marrow malignant cells"
},
{
"name": "Percentage of tumor cells"
},
{
"name": "Percentage of tumor nuclei"
},
{
"name": "Prostatic chips positive count"
},
{
"name": "Prostatic chips total count"
},
{
"name": "Percentage of prostatic involvment"
}
]
},
{
"name": "sample",
"children": [
{
"name": "Preservation method"
},
{
"name": "Specimen type"
},
{
"name": "Tissue type"
},
{
"name": "Tumor descriptor"
},
{
"name": "Biospecimen anatomic site"
},
{
"name": "Biospecimen laterality"
},
{
"name": "Catalogue reference"
},
{
"name": "Current weight of specimen"
},
{
"name": "Days to collection"
},
{
"name": "Days to sample procurement"
},
{
"name": "Pathologically confirmed diagnosis"
},
{
"name": "Distance normal to tumor"
},
{
"name": "Distributor reference"
},
{
"name": "Freezing method"
},
{
"name": "Growth rate"
},
{
"name": "Initial weight"
},
{
"name": "Intermediate dimension"
},
{
"name": "Longest dimension"
},
{
"name": "Method of sample procurement"
},
{
"name": "Passage count"
},
{
"name": "Pathology report UUID"
},
{
"name": "Sample ordinal"
},
{
"name": "Shortest dimension"
},
{
"name": "Time between clamping and freezing"
},
{
"name": "Time between excision and freezing"
},
{
"name": "Tissue collection type"
},
{
"name": "Tumor code"
},
{
"name": "Tumor code ID"
},
{
"name": "Fresh slicing method"
},
{
"name": "Final slicing method"
},
{
"name": "Time between resection and fresh slicing"
},
{
"name": "Post resection interval time unit"
},
{
"name": "Pre-final slice preservation method"
},
{
"name": "Post final slicing interval"
},
{
"name": "Post final slicing interval unit"
},
{
"name": "Permeabilisation time"
},
{
"name": "Permeabilisation time unit"
}
]
},
{
"name": "Read group",
"children": [
{
"name": "Experiment name"
},
{
"name": "Is paired end"
},
{
"name": "Library name"
},
{
"name": "Library selection method"
},
{
"name": "Library strategy"
},
{
"name": "platform"
},
{
"name": "Read group name"
},
{
"name": "Read length"
},
{
"name": "Sequencing centre"
},
{
"name": "Target capture kit"
},
{
"name": "Adapter name"
},
{
"name": "Adapter sequence"
},
{
"name": "Base caller name"
},
{
"name": "Base caller version"
},
{
"name": "ChIPseq antibody"
},
{
"name": "ChIPseq target"
},
{
"name": "Days to sequencing"
},
{
"name": "Flow cell barcode"
},
{
"name": "Maximum fragment length"
},
{
"name": "Mean fragment length"
},
{
"name": "Minimum fragment length"
},
{
"name": "Standard deviation of fragment length"
},
{
"name": "Fragmentation enzyme"
},
{
"name": "Includes spike-in"
},
{
"name": "Instrument model"
},
{
"name": "Lane number"
},
{
"name": "Library preparation catalogue number"
},
{
"name": "Library preparation kit name"
},
{
"name": "Library preparation kit vendor"
},
{
"name": "Library preparation kit version"
},
{
"name": "Library stranded-ness."
},
{
"name": "Multiplex barcode"
},
{
"name": "Expected number of cells"
},
{
"name": "RNA integrity number"
},
{
"name": "Date of sequencing"
},
{
"name": "Single cell library"
},
{
"name": "Range of size selection"
},
{
"name": "Spike-in concentration"
},
{
"name": "Name of FASTA file that contains spike-in sequence"
},
{
"name": "To trim adapter sequence"
}
]
},
{
"name": "Portion",
"children": [
{
"name": "Creation datetime"
},
{
"name": "Portion number"
}
]
},
{
"name": "Analyte",
"children": [
{
"name": "Analyte type"