diff --git a/pipelines/nextflow/modules/star_alignment/download_paired_fastqs.nf b/pipelines/nextflow/modules/star_alignment/download_paired_fastqs.nf index 1923e93..eb608df 100644 --- a/pipelines/nextflow/modules/star_alignment/download_paired_fastqs.nf +++ b/pipelines/nextflow/modules/star_alignment/download_paired_fastqs.nf @@ -56,11 +56,11 @@ process DOWNLOAD_PAIRED_FASTQS { while (!md5Match && retryCount < maxRetries) { """ - wget -qq -c -O ${pair1Path} ftp://${url1} + wget -qq -c -O ${pair1Path} ${url1} """.execute().waitFor() """ - wget -qq -c -O ${pair2Path} ftp://${url2} + wget -qq -c -O ${pair2Path} ${url2} """.execute().waitFor() // Calculate MD5 checksums of downloaded files