From eb0e9e73e069cc8df454c3295463e0b7f6a31233 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=E2=80=98ens-ftricomi=E2=80=99?= <ftricomi@ebi.ac.uk>
Date: Wed, 14 Aug 2024 09:48:57 +0100
Subject: [PATCH] added samtools resources

---
 nextflow.config | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/nextflow.config b/nextflow.config
index c49411f..41bf687 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -155,7 +155,13 @@ process {
     module = 'singularity-3.7.0-gcc-9.3.0-dp5ffrp'
     container = 'ebileanne/star:latest'
   }
-
+  withLabel: 'samtools' {
+    cpus=20
+    memory = { 10.GB * task.attempt }
+    time = { 4.h * task.attempt }
+    module = 'singularity-3.7.0-gcc-9.3.0-dp5ffrp'
+    container = "biocontainers/samtools:latest"
+  }
 }
 /*
 trace {