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Diff for: pangenes/README.md

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@@ -27,13 +27,13 @@ and produces different types of output:
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- [Definition of pangene](#definition-of-pangene)
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- [Command line demo](#command-line-demo)
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- [How it works](#how-it-works)
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- [Runmodes and HPC configuration](#runmodes-and-hpc-configuration)
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- [Transformation of gene coordinates](#transformation-of-gene-coordinates)
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- [Overlap calculation](#overlap-calculation)
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- [Pairwise genome comparisons](#pairwise-genome-comparisons)
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- [From pairs of genes to clusters](#from-pairs-of-genes-to-clusters)
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- [Parameters](#parameters)
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- [Dependencies and installation](#dependencies-and-installation)
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- [Runmodes and HPC configuration](#runmodes-and-hpc-configuration)
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- [Command-line options](#command-line-options)
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- [Input file format](#input-file-format)
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- [Example 1: default core pangene set analysis](#example-1-default-core-pangene-analysis-and-hpc-settings)

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