fixed conda EXE_GSAPATH handling

eead-csic-compbio · eead-csic-compbio · commit 818bea809e80 · 2025-01-23T11:13:56.000+01:00
diff --git a/pangenes/_collinear_genes.pl b/pangenes/_collinear_genes.pl
@@ -263,6 +263,8 @@ sub help_message {
         $GSALIGNEXE = "$gsalign_path/$GSALIGNEXE";  
     }
 
+    print "\n# gsalign binaries: $GSAINDXEXE , $GSALIGNEXE\n\n";
+
     if(`$GSALIGNEXE 2>&1` !~ 'Usage') {
         print "# ERROR: cannot find binary file $GSALIGNEXE , exit\n";
         exit(-4)

Original file line number	Diff line number	Diff line change
`@@ -263,6 +263,8 @@ sub help_message {`
`263`	`263`	`$GSALIGNEXE = "$gsalign_path/$GSALIGNEXE";`
`264`	`264`	`}`
`265`	`265`
	`266`	`+ print "\n# gsalign binaries: $GSAINDXEXE , $GSALIGNEXE\n\n";`
	`267`	`+`
`266`	`268`	if(`$GSALIGNEXE 2>&1` !~ 'Usage') {
`267`	`269`	`print "# ERROR: cannot find binary file $GSALIGNEXE , exit\n";`
`268`	`270`	`exit(-4)`