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lines changed Original file line number Diff line number Diff line change @@ -179,13 +179,19 @@ If you want to annotate repeats you must first run:
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See examples and documentation in folder [ pangenes] ( ./pangenes/ ) .
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- If you want to run any of those scripts you must first run:
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+ Install it the [ bioconda] ( https://anaconda.org/bioconda/get_pangenes ) way:
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+
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+ conda activate bioconda
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+ conda create -n get_pangenes -c conda-forge -c bioconda get_pangenes
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+ # optionally check 'Runmodes and HPC configuration' in documentation
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+ conda activate get_pangenes
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+
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+ Install it the compilation way:
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#make install # install required bedtools
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make install_pangenes # requires gcc & g++ compilers
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- Optionally you might also want to try:
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+ # optionally you might also want to try:
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make install_gsalign
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make install_pangenes_quality
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