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added bioconda instructions for get_pangenes
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Diff for: README.md

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@@ -179,13 +179,19 @@ If you want to annotate repeats you must first run:
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See examples and documentation in folder [pangenes](./pangenes/).
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If you want to run any of those scripts you must first run:
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Install it the [bioconda](https://anaconda.org/bioconda/get_pangenes) way:
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conda activate bioconda
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conda create -n get_pangenes -c conda-forge -c bioconda get_pangenes
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# optionally check 'Runmodes and HPC configuration' in documentation
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conda activate get_pangenes
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Install it the compilation way:
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#make install # install required bedtools
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make install_pangenes # requires gcc & g++ compilers
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Optionally you might also want to try:
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# optionally you might also want to try:
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make install_gsalign
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make install_pangenes_quality
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