diff --git a/ensembl/htdocs/Mus_musculus_strains.inc b/ensembl/htdocs/Mus_musculus_strains.inc index 74f5d125d..b8759b8ed 100644 --- a/ensembl/htdocs/Mus_musculus_strains.inc +++ b/ensembl/htdocs/Mus_musculus_strains.inc @@ -12,9 +12,23 @@

Comparative analysis

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We generated a multiple genome alignment of all the genomes from the The Mouse Genomes Project with Mus musculus, Rattus norvegicus and additional four Mus species using our EPO pipeline. Additionally, we have computed a LastZ alignment of Mus musculus and Mus spretus.

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Using our EPO pipeline, we generated a multiple genome alignment of 16 of the + reference-quality genomes from the The Mouse Genomes Project with Mus + musculus, Rattus norvegicus and an additional three Mus + species: Mus caroli, Mus pahari and Mus + spicilegus. Additionally, we have computed a LastZ alignment of Mus + spretus and the three additional Mus species against the Mus + musculus reference genome.

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We provide two sets of gene-trees and orthologues in Ensembl. The standard gene-trees and orthologues comprise genes from one representative for every Ensembl species, whilst the Murinae-specific gene-trees and orthologues comprise genes from all mouse strains and include genes from Mus musculus, Mus spretus and Rattus norvegicus. A stepwise approach via one these three species is required in order to compare genes from mouse strains to genes from species not in the Murinae set.

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We provide multiple sets of gene-trees and orthologues in Ensembl, two of + which include genes from a mouse genome. The standard gene-trees and + orthologues comprise genes from representatives of selected Ensembl species, + whilst the Murinae-specific gene-trees and orthologues comprise genes from + all mouse strains and include genes from Mus musculus, Rattus + norvegicus, Mus spretus and the three aforementioned Mus + species. A stepwise approach via one of these six species is required in + order to compare genes from mouse strains to genes from species not in the + Murinae set.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.