git ignore addition; disable mart for admin; docs changes

Author: ens-admin

.gitignore

@@ -1,3 +1,8 @@
+/*/htdocs/info/docs/Doxygen/*/*
+/*/htdocs/opensearch
+tools/utils/beekeeper.config
+tools/utils/beekeeper.cronlog
+tools/utils/beekeeper.log
 blib/
 .build/
 _build/

admin/conf/SiteDefs.pm

@@ -54,6 +54,7 @@ sub update_conf {
     Account         => 'Modal',
   };
 
+  $SiteDefs::ENSEMBL_MART_ENABLED   = 0;
   $SiteDefs::ENSEMBL_MEMCACHED      = {};
 
   ## Databases used in Rose::Db::Object derived objects

docs/htdocs/info/docs/tools/vep/script/vep_other.html

@@ -325,7 +325,6 @@ <h3 id="refseq_limitations">Identifiers and other data</h3>
         <li>CCDS identifiers</li>
         <li>Protein domains</li>
         <li>Gene-phenotype association data</li>
-        <li>LRG genes</li>
       </ul>
     </li>
   </ul>

docs/htdocs/info/docs/webcode/mirror/configure.html

@@ -108,6 +108,9 @@ <h4>General configuration</h4>
 <h4>Configuration of the Apache web server</h4>
 <p>Change $SiteDefs::ENSEMBL_SERVERNAME to the web name of the server - e.g. "www.yoursite.org". This value is
 dynamically set to the server hostname by default.</p>
+<p>Change $SiteDefs::ENSEMBL_USER and $SiteDefs::ENSEMBL_GROUP to the system user and group you want the Apache
+web server to run as. Usually, for security, this is a special user (such as "nobody") who has very few
+permissions.</p>
 
 <h4>Configuration of hubCheck (optional)</h4>