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Description
Got
AttributeError: 'MemgraphClient' object has no attribute 'client'
when executing
from config import config
import dataexplorer
dataexploreragent = dataexplorer.DataExplorerEscargot(config, model_name="azuregpt-4o-mini")
import cyphergpt
cyphergptAgent = cyphergpt.CypherEscargot(
config,
node_types = "BiologicalProcess, BodyPart, CellularComponent, Datatype, Disease, Drug, DrugClass, Gene, MolecularFunction, Pathway, Symptom",
relationship_types = """CHEMICALBINDSGENE
CHEMICALDECREASESEXPRESSION
CHEMICALINCREASESEXPRESSION
DRUGINCLASS
DRUGCAUSESEFFECT
DRUGTREATSDISEASE
GENEPARTICIPATESINBIOLOGICALPROCESS
GENEINPATHWAY
GENEINTERACTSWITHGENE
GENEHASMOLECULARFUNCTION
GENEASSOCIATEDWITHCELLULARCOMPONENT
GENEASSOCIATESWITHDISEASE
SYMPTOMMANIFESTATIONOFDISEASE
BODYPARTUNDEREXPRESSESGENE
BODYPARTOVEREXPRESSESGENE
DISEASELOCALIZESTOANATOMY
DISEASEASSOCIATESWITHDISEASET""",
relationship_scores="""CHEMICALBINDSGENE ['affinity_nM']
CHEMICALDECREASESEXPRESSION ['z_score']
CHEMICALINCREASESEXPRESSION ['z_score']
DISEASELOCALIZESTOANATOMY ['p_fisher']
GENEASSOCIATESWITHDISEASE ['score']
GENECOVARIESWITHGENE ['correlation']
SYMPTOMMANIFESTATIONOFDISEASE ['p_fisher']
TRANSCRIPTIONFACTORINTERACTSWITHGENE ['confidence']""" ,
model_name="azuregpt-4o-mini")
cyphergptAgent.memgraph_client.schema ="""Node properties are the following:
Node name: 'BiologicalProcess', Node properties: ['commonName']
Node name: 'BodyPart', Node properties: ['commonName']
Node name: 'CellularComponent', Node properties: ['commonName']
Node name: 'Disease', Node properties: ['commonName']
Node name: 'Drug', Node properties: ['commonName']
Node name: 'DrugClass', Node properties: ['commonName']
Node name: 'Gene', Node properties: ['commonName', 'geneSymbol', 'typeOfGene']
Node name: 'MolecularFunction', Node properties: ['commonName']
Node name: 'Pathway', Node properties: ['pathwayName']
Node name: 'Symptom', Node properties: ['commonName']
Relationship properties are the following:
The relationships are the following:
(:Drug)-[:CHEMICALBINDSGENE]-(:Gene)
(:Drug)-[:CHEMICALDECREASESEXPRESSION]-(:Gene)
(:Drug)-[:CHEMICALINCREASESEXPRESSION]-(:Gene)
(:Drug)-[:DRUGINCLASS]-(:DrugClass)
(:Drug)-[:DRUGCAUSESEFFECT]-(:Disease)
(:Drug)-[:DRUGTREATSDISEASE]-(:Disease)
(:Gene)-[:GENEPARTICIPATESINBIOLOGICALPROCESS]-(:BiologicalProcess)
(:Gene)-[:GENEINPATHWAY]-(:Pathway)
(:Gene)-[:GENEINTERACTSWITHGENE]-(:Gene)
(:Gene)-[:GENEHASMOLECULARFUNCTION]-(:MolecularFunction)
(:Gene)-[:GENEASSOCIATEDWITHCELLULARCOMPONENT]-(:CellularComponent)
(:Gene)-[:GENEASSOCIATESWITHDISEASE]-(:Disease)
(:Symptom)-[:SYMPTOMMANIFESTATIONOFDISEASE]-(:Disease)
(:BodyPart)-[:BODYPARTUNDEREXPRESSESGENE]-(:Gene)
(:BodyPart)-[:BODYPARTOVEREXPRESSESGENE]-(:Gene)
(:Disease)-[:DISEASELOCALIZESTOANATOMY]-(:BodyPart)
(:Disease)-[:DISEASEASSOCIATESWITHDISEASET]-(:Disease)"""
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