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Input file problem #18

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treasure316 opened this issue May 15, 2023 · 0 comments
Open

Input file problem #18

treasure316 opened this issue May 15, 2023 · 0 comments

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@treasure316
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Dear Professor
Could you please provide the relevant input files in the 00.rawData folder where the input files in the website(https://github.com/GRONINGEN-MICROBIOME-CENTRE/Groningen-Microbiome/blob/master/Projects/SV_BA/s01.Data_cleaning.Rmd) are located, or could you please tell me how to get them?Or give me a sample file.
I've got the file of "dsgv.csv","vsgv.csv" and "representatives.genomes.taxonomy.csv".
I don't know how to get "s02.dSVs_anno.tsv", "s03.vSVs_anno.tsv", "Species_genome_size.tsv“, ”NCBI_accession.txt“, ”progenome1_species_relationship.tsv“, ”LLD.s1135.SV_spe_abun.S.tsv“,”300OB.s298.SV_spe_abun.S.tsv“

                                                                                                                                          Looking forward to your reply. 
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