add mims example

Author: mslarae13

examples/MixsCompliantData-MimsSoil-example.yaml

@@ -1,4 +1,4 @@
-mims_soil_data:
+mimsmisip_soil_data:
   - collection_date: "2013-03-25T12:42:31+01:00"
     depth: 1.234 units
     elev: 1.234 units
@@ -11,15 +11,17 @@ mims_soil_data:
     samp_name: msd1
     samp_taxon_id: Gut Metagenome [NCBITaxon:749906]
     seq_meth: absolutely any text
-  - collection_date: "2013-03-25T12:42:31+01:00"
-    depth: 1.234 units
-    elev: 1.234 units
-    env_broad_scale: term [ONTOLOGY:123]
-    env_local_scale: term [ONTOLOGY:123]
-    env_medium: term [ONTOLOGY:123]
-    geo_loc_name: "text: text, text"
-    lat_lon: 45.1 45.9
-    project_name: absolutely any text
-    samp_name: msd2
-    samp_taxon_id: Gut Metagenome [NCBITaxon:749906]
-    seq_meth: absolutely any text
+    isotope: 13C; 15N
+    isotopolog: toluene [pubchem.compound:1140]; water [pubchem.compound:962]
+    isotopolog_label: natural abundance
+    isotopolog_approach: multiple
+    gradient_position: 1
+    gradient_pos_density: 1.725 g/mL
+    gradient_pos_rel_am: 10%
+    sip_method: https://doi.org/10.1038/s41396-018-0279-6
+    isotopolog_atom_frac: 0.95
+    isotopolog_atom_pos: 1S/C7H8/c1-7-5-3-2-4-6-7/h2-6H,1H3/i1+1,2+1,3+1,4+1,5+1,6+1,7+1; 1S/C6H12O6/c7-1-3(9)5(11)6(12)4(10)2-8/h1,3-6,8-12H,2H2/t3-,4+,5+,6+/m0/s1
+    isotopolog_dose: 10 ppm 
+    nucleobase_atom_frac: 25%
+    isotopolog_incu_time: 12 hour
+    internal_standard: https://doi.org/10.1101/2022.12.20.521340

src/mixs/schema/mixs.yaml

@@ -21550,7 +21550,7 @@ classes:
     mixins:
       - MimarksS
     class_uri: MIXS:0010008_0016014
-  MimsAgriculture: ##for each checklist + extension, do I need to make an MIMS-MISIP + extension?
+  MimsAgriculture:
     description: MIxS Data that comply with the Mims checklist and the Agriculture
       Extension
     title: Mims combined with Agriculture