Merge pull request #919 from GenomicsStandardsConsortium/918-start-using-type-exclusions-in-linkml-linter

type exclusion in linter via linkml 1.9.1

Author: turbomam

.linkmllint.yaml

@@ -0,0 +1,10 @@
+extends: recommended
+rules:
+  recommended:
+    level: error
+    exclude_type:
+      - enum_definition
+  standard_naming:
+    level: error
+    exclude_type:
+      - permissible_value

poetry.lock

@@ -12,7 +12,7 @@ include = ["README.md", "src/mixs/schema", "project"]
 
 [tool.poetry.dependencies]
 python = "^3.9"
-linkml-runtime = "^1.6.0"
+linkml-runtime = "^1.9.1"
 rdflib = "^6.2.0" # some LinkML components are not compatible with rdflib 7+ yet
 #pydantic = "^1.10.13"
 
@@ -26,7 +26,7 @@ matplotlib = "^3.8.2"
 pyarrow = "^15.0.0"
 
 [tool.poetry.group.dev.dependencies]
-linkml = "^1.6.0"
+linkml = "^1.9.1"
 
 mkdocs-material = "^9.0.12"
 mkdocs-mermaid2-plugin = "^0.6.0"