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Do we have a function to compute RNA velocity for cell by gene matrix? #26

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HelloWorldLTY opened this issue Jan 13, 2024 · 1 comment

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@HelloWorldLTY
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Hi, I wonder if there is any function in celldancer which can generate the raw RNA velocity matrix. I intend to compare this method with other RNA velocity estimation method. Thanks a lot.

@Abclisy
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Abclisy commented Mar 15, 2024

Hello,

Thank you for reaching out. The to_dynamo function might be helpful for you to transfer the dataframe to data. Then you can extract the velocity matrix from the adata.

Best,
Shengyu

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